Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   RC72_RS21520 Genome accession   NZ_CP010116
Coordinates   4173528..4174043 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain C1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4168528..4179043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RC72_RS21495 (RC72_20440) ygaZ 4168927..4169664 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  RC72_RS21500 (RC72_20445) ygaH 4169654..4169989 (+) 336 WP_000119745.1 L-valine transporter subunit YgaH -
  RC72_RS21505 (RC72_20450) emrR 4170080..4170610 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  RC72_RS21510 (RC72_20455) emrA 4170737..4171909 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  RC72_RS21515 (RC72_20460) emrB 4171926..4173464 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  RC72_RS21520 (RC72_20465) luxS 4173528..4174043 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  RC72_RS21525 (RC72_20470) gshA 4174193..4175749 (-) 1557 WP_001551535.1 glutamate--cysteine ligase -
  RC72_RS21530 (RC72_20475) yqaA 4175822..4176250 (-) 429 WP_001287454.1 YqaA family protein -
  RC72_RS21535 (RC72_20480) yqaB 4176247..4176813 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  RC72_RS21565 (RC72_20510) csrA 4178043..4178228 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=115142 RC72_RS21520 WP_001130211.1 4173528..4174043(-) (luxS) [Escherichia coli strain C1]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=115142 RC72_RS21520 WP_001130211.1 4173528..4174043(-) (luxS) [Escherichia coli strain C1]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731