Detailed information    

insolico Bioinformatically predicted

Overview


Name   proC   Type   Machinery gene
Locus tag   P3C28_RS05990 Genome accession   NZ_OU532558
Coordinates   1137118..1137849 (+) Length   243 a.a.
NCBI ID   WP_002859150.1    Uniprot ID   A0AB36G763
Organism   Campylobacter jejuni isolate     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1132118..1142849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3C28_RS05960 (CJ121364_001159) rpsF 1132264..1132641 (+) 378 WP_002853062.1 30S ribosomal protein S6 -
  P3C28_RS05965 (CJ121364_001160) ssb 1132650..1133198 (+) 549 WP_002860190.1 single-stranded DNA-binding protein -
  P3C28_RS05970 (CJ121364_001161) rpsR 1133209..1133469 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  P3C28_RS05975 (CJ121364_001162) lon 1133529..1135904 (-) 2376 WP_002853487.1 endopeptidase La -
  P3C28_RS05980 (CJ121364_001163) - 1135921..1136568 (-) 648 WP_002860191.1 outer membrane protein assembly factor BamD -
  P3C28_RS05985 (CJ121364_001164) fliW 1136729..1137118 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  P3C28_RS05990 (CJ121364_001165) proC 1137118..1137849 (+) 732 WP_002859150.1 pyrroline-5-carboxylate reductase Machinery gene
  P3C28_RS05995 (CJ121364_001166) ctsT 1137846..1138148 (+) 303 WP_002853046.1 type II secretion system protein Machinery gene
  P3C28_RS06000 (CJ121364_001167) - 1138145..1138807 (+) 663 WP_002858296.1 hypothetical protein -
  P3C28_RS06005 (CJ121364_001168) - 1138804..1139256 (+) 453 WP_002859148.1 hypothetical protein -
  P3C28_RS06010 (CJ121364_001169) hemD 1139253..1139882 (-) 630 WP_002869541.1 uroporphyrinogen-III synthase -
  P3C28_RS06015 (CJ121364_001170) thiE 1139860..1140492 (-) 633 WP_002852670.1 thiamine phosphate synthase -
  P3C28_RS06020 (CJ121364_001171) thiD 1140482..1141294 (-) 813 WP_002869542.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  P3C28_RS06025 (CJ121364_001172) - 1141291..1141977 (-) 687 WP_002852847.1 endonuclease III domain-containing protein -
  P3C28_RS06030 (CJ121364_001173) - 1141974..1142735 (-) 762 WP_032585146.1 ATP-binding protein -

Sequence


Protein


Download         Length: 243 a.a.        Molecular weight: 26559.95 Da        Isoelectric Point: 8.5934

>NTDB_id=1151300 P3C28_RS05990 WP_002859150.1 1137118..1137849(+) (proC) [Campylobacter jejuni isolate]
MLYILANGSMATALAYGLKDDYEICIVGRSIEKLQALAKEGFKTLLYKDFNIEGKDVILAFKPYALENIAQMLKGQARIL
ISVLANVDFEKLQTIKAQNYVRIIPNTAAKYKASTTPYILKNSHFENEILDILKTFGSAYKLDNEIQMNAAMAISGCAPA
FLALIAESIANAGVYEGLSKELSLNLTRSLFKSSSALLEHEHPAIIKENICSPGGVTIKGIKILEQKGIRGSFFEAINAS
SAK

Nucleotide


Download         Length: 732 bp        

>NTDB_id=1151300 P3C28_RS05990 WP_002859150.1 1137118..1137849(+) (proC) [Campylobacter jejuni isolate]
ATGCTCTATATACTTGCAAATGGATCTATGGCAACAGCCTTAGCCTATGGGTTAAAAGATGATTATGAAATTTGTATAGT
AGGAAGAAGTATAGAAAAACTTCAAGCCCTCGCCAAAGAAGGCTTTAAAACCTTACTTTACAAAGATTTTAACATAGAAG
GTAAAGATGTTATTTTAGCATTTAAACCTTATGCTTTAGAAAATATTGCTCAAATGCTAAAAGGACAAGCACGTATCTTA
ATCTCTGTTTTAGCCAATGTTGATTTTGAAAAACTACAAACCATCAAAGCTCAAAATTATGTTAGAATAATACCCAATAC
AGCAGCTAAATACAAGGCTTCAACCACACCATATATACTTAAAAACTCTCATTTTGAAAATGAAATTTTAGACATTTTAA
AAACTTTTGGCTCGGCTTATAAATTAGATAATGAAATACAAATGAATGCAGCTATGGCAATTAGCGGCTGCGCTCCTGCT
TTTTTAGCACTTATAGCAGAAAGCATTGCTAATGCTGGAGTTTATGAAGGTTTGTCAAAAGAACTTAGTCTCAATCTTAC
GCGCTCTTTATTTAAAAGCTCTAGTGCTTTACTAGAACATGAACATCCAGCTATTATCAAAGAAAATATTTGCTCCCCTG
GCGGAGTTACAATAAAAGGCATAAAAATACTCGAACAAAAAGGAATTCGCGGAAGTTTTTTTGAAGCCATAAATGCTAGC
AGCGCTAAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

99.588

100

0.996


Multiple sequence alignment