Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   P3C57_RS02075 Genome accession   NZ_OU532556
Coordinates   411994..412962 (-) Length   322 a.a.
NCBI ID   WP_002829485.1    Uniprot ID   -
Organism   Campylobacter coli isolate     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 406994..417962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3C57_RS02055 (CC177238_000407) - 408509..409141 (-) 633 WP_002806260.1 membrane protein -
  P3C57_RS02060 (CC177238_000408) - 409307..410296 (-) 990 WP_002777774.1 siderophore ABC transporter substrate-binding protein -
  P3C57_RS02065 (CC177238_000409) - 410311..411066 (-) 756 WP_002785724.1 ABC transporter ATP-binding protein -
  P3C57_RS02070 (CC177238_000410) - 411063..412001 (-) 939 WP_002777770.1 iron chelate uptake ABC transporter family permease subunit -
  P3C57_RS02075 (CC177238_000411) ceuB 411994..412962 (-) 969 WP_002829485.1 ABC transporter permease Machinery gene
  P3C57_RS02080 (CC177238_000412) - 413095..413988 (-) 894 WP_234930038.1 phospholipase A -
  P3C57_RS02085 (CC177238_000413) - 414087..414662 (-) 576 WP_002780540.1 molybdenum cofactor guanylyltransferase -
  P3C57_RS02090 (CC177238_000414) - 414725..416032 (+) 1308 WP_072224242.1 NFACT RNA binding domain-containing protein -
  P3C57_RS02095 (CC177238_000415) - 416034..416372 (+) 339 WP_002777761.1 hypothetical protein -
  P3C57_RS02100 (CC177238_000416) - 416381..417106 (+) 726 WP_002780542.1 phosphatidate cytidylyltransferase -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35463.34 Da        Isoelectric Point: 9.5069

>NTDB_id=1151273 P3C57_RS02075 WP_002829485.1 411994..412962(-) (ceuB) [Campylobacter coli isolate]
MLFKHLFSLNILLILLVVFGMISLFIGVIRINLDDIFSLSATQLEIILLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFAGASFFAQALIASIFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIINAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIAGMGEDLALNLGVSYNTILFLGLIIVSIITSVV
IVSIGVIPFLGLIIPNLVAIYRGDNLKKNLIYIALCGALFLLICDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKT
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=1151273 P3C57_RS02075 WP_002829485.1 411994..412962(-) (ceuB) [Campylobacter coli isolate]
TTGCTTTTTAAACACTTGTTTAGTTTAAATATTCTTTTAATTTTACTTGTTGTTTTTGGAATGATAAGCTTATTTATAGG
GGTTATTCGTATCAATTTAGACGATATTTTTTCACTCAGCGCTACCCAGCTTGAAATCATTTTACTTACAAGAATTCCAA
GGCTTATTGCAATTTTACTTACAGGTATGAGTCTTAGTATATGCGGACTCATCATGCAACAACTCACGCAAAATAAATTT
GTTTCCCCAACTACCGCAGGGACTATGGATTGTGCTAAATTTGGCATTTTGATTTCTTTAATATTTTTTGCAGGAGCTTC
TTTTTTTGCTCAAGCTCTCATCGCATCTATTTTTGCTCTTTTAGGTTCTTTTATATTTATCCAAATTCTAAGAAAAATTA
AACTTAAAGATGTGATTTTTGTGCCTTTGATAGGATTAATGTTTGGTGGGATTATAAATGCTATAACCACTTTTTTTGCT
TATGCTTTAAATTATATACAAAATATCCAAGGCTGGCTACAGGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
GCTTTATATTTCTTTACCGCTTTTTATACTTGCTTATTTTCTAGCCCATAAAATCACTATAGCAGGTATGGGAGAAGATC
TTGCTTTAAATCTTGGAGTTTCTTATAATACAATCTTATTTTTAGGCTTAATAATAGTTTCTATTATCACTAGCGTAGTG
ATTGTAAGCATTGGAGTTATACCTTTTTTAGGTCTTATCATCCCTAATCTTGTTGCCATTTATCGCGGGGATAATCTTAA
GAAAAATCTTATCTATATAGCATTATGCGGGGCTTTGTTTTTACTTATTTGCGATATTATCTCAAGACTTGTGATTTTTC
CTTTTGAAATGCCTTTGAGTATAACCACAGGTGTTTTGGGCTCTTTAATTTTTATTTTTCTTTTACTCAAAAGGAAAACT
TATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

89.441

100

0.894

Multiple sequence alignment