Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LIX80_RS23150 Genome accession   NZ_OU342919
Coordinates   4718997..4719626 (-) Length   209 a.a.
NCBI ID   WP_123129830.1    Uniprot ID   -
Organism   Escherichia coli isolate UR21/11-869     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4713997..4724626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIX80_RS23135 (AMUR21_04549) helD 4714239..4716293 (-) 2055 WP_000420533.1 DNA helicase IV -
  LIX80_RS23140 (AMUR21_04550) yccF 4716416..4716862 (+) 447 WP_001261231.1 YccF domain-containing protein -
  LIX80_RS23145 (AMUR21_04551) yccS 4716872..4719034 (+) 2163 WP_123129831.1 YccS family putative transporter -
  LIX80_RS23150 (AMUR21_04552) sxy/tfoX 4718997..4719626 (-) 630 WP_123129830.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  LIX80_RS23155 (AMUR21_04553) sulA 4719845..4720354 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  LIX80_RS23160 (AMUR21_04554) ompA 4720711..4721763 (+) 1053 WP_000750419.1 porin OmpA -
  LIX80_RS23165 (AMUR21_04555) matP 4721838..4722290 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  LIX80_RS23170 (AMUR21_04556) ycbZ 4722476..4724236 (+) 1761 WP_000156526.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24102.98 Da        Isoelectric Point: 9.0428

>NTDB_id=1151229 LIX80_RS23150 WP_123129830.1 4718997..4719626(-) (sxy/tfoX) [Escherichia coli isolate UR21/11-869]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQECPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1151229 LIX80_RS23150 WP_123129830.1 4718997..4719626(-) (sxy/tfoX) [Escherichia coli isolate UR21/11-869]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTGTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment