Detailed information NTG0115086

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: N900_RS01165
• Genome accession: NZ_CP006947
• Coordinates: 238869..239876 (+)
• Length: 335 a.a.
• NCBI ID: WP_000224452.1
• Uniprot ID: A0A085RG68
• Organism: Vibrio cholerae O1 str. KW3
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 233869..244876

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N900_RS01145 (N900_01125)	metJ	233873..234190 (+)	318	WP_000796267.1	met regulon transcriptional regulator MetJ	-
N900_RS01150 (N900_01130)	-	234301..235578 (-)	1278	WP_001278588.1	malic enzyme-like NAD(P)-binding protein	-
N900_RS01155 (N900_01135)	rpmE	235886..236104 (-)	219	WP_000643446.1	50S ribosomal protein L31	-
N900_RS01160 (N900_01140)	priA	236359..238563 (+)	2205	WP_001247858.1	primosomal protein N'	-
N900_RS01165 (N900_01145)	cytR	238869..239876 (+)	1008	WP_000224452.1	DNA-binding transcriptional regulator CytR	Regulator
N900_RS01170 (N900_01150)	-	240048..240599 (+)	552	WP_001884022.1	SPOR domain-containing protein	-
N900_RS01175 (N900_01155)	hslV	240736..241293 (+)	558	WP_000208249.1	ATP-dependent protease subunit HslV	-
N900_RS01180 (N900_01160)	hslU	241359..242690 (+)	1332	WP_001293370.1	HslU--HslV peptidase ATPase subunit	-
N900_RS01185 (N900_01165)	-	242794..243711 (+)	918	WP_001066162.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
N900_RS01190 (N900_01170)	rraA	243786..244301 (+)	516	WP_000456236.1	ribonuclease E activity regulator RraA	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37018.59 Da
• Isoelectric Point: 7.0759

>NTDB_id=115086 N900_RS01165 WP_000224452.1 238869..239876(+) (cytR) [Vibrio cholerae O1 str. KW3]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLVVRESAAPPSKK

Nucleotide

• Length: 1008 bp

>NTDB_id=115086 N900_RS01165 WP_000224452.1 238869..239876(+) (cytR) [Vibrio cholerae O1 str. KW3]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGAGTTTCAACCGCGACCGTGTCTCGTGCGTTGATGAATCCAGAGAA
AGTCTCGTCGTCCACTCGTAAACGAGTGGAAGAGGCCGTGCTGGAAGCGGGTTACTCACCCAATTCTTTGGCGCGCAATT
TGCGCCGTAATGAATCGAAAACCATCGTTGCTATCGTGCCAGATATCTGTGATCCCTACTTTTCTGAGATCATTCGCGGT
ATTGAAGATGCCGCGATGGAGCACGGTTATCTGGTGCTGTTGGGGGATAGTGGTCAACAGAAGCGTCGGGAGAACTCGTT
CGTTAATCTGGTGTTTACCAAACAGGCAGACGGTATGTTGCTGCTGGGGACAGATTTGCCGTTTGATGTGAGTAAACCTG
AGCAGAAAAACCTACCGCCTATGGTGATGGCGTGTGAATTTGCGCCAGAGCTGGAATTGCCAACGGTACACATTGATAAC
CTGACCTCGGCATTTGAGGCGGTAAACTATCTCACTCAGCTTGGGCACAAACGGATTGCGCAGATCTCAGGTCCACAACA
TGCTGCGCTGTGCCAATTCCGTCATCAAGGCTATCAACAGGCGTTGCGTCGTGCTGGCATCACCATGAACCCGACTTACT
GCACTTTTGGCGATTTCACTTTTGAAGCCGGGGCAAAAGCGGTGCGTCAGCTGTTGGCATTGCCTGAGCAGCCGACCGCG
ATTTTCTGTCATAACGATACGATGGCGATTGGCGCAATTCAGGAAGCGAAGCGACTTGGCTTGCGCGTACCGCAAGATCT
CTCTGTGGTCGGTTTTGACGATATTCAGTTTGCCCAGTACTGCGATCCCCCATTAACCACCATTTCGCAGCCGCGTTATG
AGATTGGCCGTCAAGCCATGCTGATGATGCTTGAGCTGCTTCGCGGACACGATGTACGTGCTGGATCGCGTCTTTTGGAG
ACCAAGCTGGTCGTGCGTGAGAGTGCTGCGCCGCCAAGCAAGAAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A085RG68

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	100	100	1
cytR	Vibrio parahaemolyticus RIMD 2210633	90.719	99.701	0.904