Detailed information
Bioinformatically predicted
Overview
| Name | comF | Type | Machinery gene |
| Locus tag | KKQ76_RS08440 | Genome accession | NZ_OU015321 |
| Coordinates | 1824555..1825205 (+) | Length | 216 a.a. |
| NCBI ID | WP_213196743.1 | Uniprot ID | - |
| Organism | Cloacibacterium caeni isolate Isolate2 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1819555..1830205
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KKQ76_RS08425 | - | 1821691..1822557 (-) | 867 | WP_246501372.1 | hypothetical protein | - |
| KKQ76_RS08430 | - | 1822601..1823737 (-) | 1137 | WP_213196741.1 | ATP-binding protein | - |
| KKQ76_RS08435 | - | 1823955..1824404 (+) | 450 | WP_213196742.1 | DUF4442 domain-containing protein | - |
| KKQ76_RS08440 | comF | 1824555..1825205 (+) | 651 | WP_213196743.1 | ComF family protein | Machinery gene |
| KKQ76_RS08445 | - | 1825211..1826071 (-) | 861 | WP_213196744.1 | hypothetical protein | - |
| KKQ76_RS08450 | upp | 1826078..1826728 (-) | 651 | WP_213196745.1 | uracil phosphoribosyltransferase | - |
| KKQ76_RS08455 | der | 1826863..1828170 (-) | 1308 | WP_213196746.1 | ribosome biogenesis GTPase Der | - |
| KKQ76_RS08460 | - | 1828395..1829021 (+) | 627 | WP_213196747.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 216 a.a. Molecular weight: 25326.45 Da Isoelectric Point: 8.8504
>NTDB_id=1150803 KKQ76_RS08440 WP_213196743.1 1824555..1825205(+) (comF) [Cloacibacterium caeni isolate Isolate2]
MLLDLLFPNRCLHCNTIISKDELVCHVCFPQIKFSHFNFYEENPLKQRCKLLFPVKNAYAVMEFQEEALSQKIIHQLKYR
SQEKVGKIMAEWTLERIYLSEKPDVLITVPLHPKKLKKRGYNQLHIFADTLSKNWEIPHHKEALKRNSYQKAQAQKDKSH
RAETKYDFSLTEEISGKHVLLIDDVFTTGNTISAIAWEILKNPRNEVSVLVMAFDV
MLLDLLFPNRCLHCNTIISKDELVCHVCFPQIKFSHFNFYEENPLKQRCKLLFPVKNAYAVMEFQEEALSQKIIHQLKYR
SQEKVGKIMAEWTLERIYLSEKPDVLITVPLHPKKLKKRGYNQLHIFADTLSKNWEIPHHKEALKRNSYQKAQAQKDKSH
RAETKYDFSLTEEISGKHVLLIDDVFTTGNTISAIAWEILKNPRNEVSVLVMAFDV
Nucleotide
Download Length: 651 bp
>NTDB_id=1150803 KKQ76_RS08440 WP_213196743.1 1824555..1825205(+) (comF) [Cloacibacterium caeni isolate Isolate2]
ATGCTGCTGGATTTACTGTTCCCGAACAGATGTCTACATTGTAACACCATCATTTCAAAAGACGAATTGGTTTGCCATGT
ATGTTTCCCTCAAATTAAGTTTTCTCATTTTAATTTCTACGAAGAAAATCCTCTGAAACAGAGATGTAAGCTTTTATTTC
CCGTGAAAAATGCTTATGCTGTGATGGAATTTCAAGAAGAAGCATTGAGCCAAAAAATTATTCACCAACTCAAATATCGC
TCTCAGGAAAAAGTTGGAAAAATCATGGCTGAATGGACTTTGGAAAGAATTTACCTTTCAGAAAAACCAGATGTTTTAAT
TACGGTTCCGCTTCATCCTAAAAAATTAAAAAAACGAGGTTATAATCAGTTGCATATTTTTGCAGACACGCTTTCTAAAA
ATTGGGAAATTCCTCATCATAAAGAAGCGCTCAAAAGAAATTCTTACCAAAAAGCACAAGCTCAAAAAGACAAATCTCAT
CGCGCCGAAACGAAATACGATTTCTCGCTCACCGAAGAAATTTCTGGGAAACATGTTTTGTTAATAGACGATGTTTTCAC
CACAGGAAATACGATAAGTGCCATTGCTTGGGAAATTTTGAAAAATCCAAGGAATGAAGTTAGCGTTTTGGTAATGGCTT
TTGATGTGTAA
ATGCTGCTGGATTTACTGTTCCCGAACAGATGTCTACATTGTAACACCATCATTTCAAAAGACGAATTGGTTTGCCATGT
ATGTTTCCCTCAAATTAAGTTTTCTCATTTTAATTTCTACGAAGAAAATCCTCTGAAACAGAGATGTAAGCTTTTATTTC
CCGTGAAAAATGCTTATGCTGTGATGGAATTTCAAGAAGAAGCATTGAGCCAAAAAATTATTCACCAACTCAAATATCGC
TCTCAGGAAAAAGTTGGAAAAATCATGGCTGAATGGACTTTGGAAAGAATTTACCTTTCAGAAAAACCAGATGTTTTAAT
TACGGTTCCGCTTCATCCTAAAAAATTAAAAAAACGAGGTTATAATCAGTTGCATATTTTTGCAGACACGCTTTCTAAAA
ATTGGGAAATTCCTCATCATAAAGAAGCGCTCAAAAGAAATTCTTACCAAAAAGCACAAGCTCAAAAAGACAAATCTCAT
CGCGCCGAAACGAAATACGATTTCTCGCTCACCGAAGAAATTTCTGGGAAACATGTTTTGTTAATAGACGATGTTTTCAC
CACAGGAAATACGATAAGTGCCATTGCTTGGGAAATTTTGAAAAATCCAAGGAATGAAGTTAGCGTTTTGGTAATGGCTT
TTGATGTGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comF | Riemerella anatipestifer ATCC 11845 = DSM 15868 |
50.926 |
100 |
0.509 |