Detailed information
Bioinformatically predicted
Overview
| Name | comEA/comE1 | Type | Machinery gene |
| Locus tag | X874_RS08540 | Genome accession | NZ_CP006944 |
| Coordinates | 1827167..1827496 (+) | Length | 109 a.a. |
| NCBI ID | WP_025248216.1 | Uniprot ID | - |
| Organism | Mannheimia varigena USDA-ARS-USMARC-1312 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1822167..1832496
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| X874_RS08515 (X874_16950) | rpsL | 1822452..1822826 (-) | 375 | WP_005708967.1 | 30S ribosomal protein S12 | - |
| X874_RS08520 (X874_16960) | rfaC | 1822946..1823905 (-) | 960 | WP_025248213.1 | lipopolysaccharide heptosyltransferase RfaC | - |
| X874_RS08525 (X874_16970) | waaF | 1823976..1825013 (-) | 1038 | WP_025248214.1 | lipopolysaccharide heptosyltransferase II | - |
| X874_RS08530 (X874_16980) | - | 1825048..1825467 (-) | 420 | WP_025218022.1 | MliC family protein | - |
| X874_RS08535 (X874_16990) | - | 1825526..1826878 (-) | 1353 | WP_025248215.1 | LysM-like peptidoglycan-binding domain-containing protein | - |
| X874_RS08540 (X874_17000) | comEA/comE1 | 1827167..1827496 (+) | 330 | WP_025248216.1 | ComEA family DNA-binding protein | Machinery gene |
| X874_RS08545 (X874_17020) | asd | 1827658..1828548 (+) | 891 | WP_025248217.1 | archaetidylserine decarboxylase | - |
| X874_RS08550 (X874_17030) | gshAB | 1828711..1830987 (+) | 2277 | WP_025248218.1 | bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB | - |
| X874_RS08555 (X874_17040) | manX | 1831309..1832286 (+) | 978 | WP_025248219.1 | PTS mannose transporter subunit IIAB | - |
Sequence
Protein
Download Length: 109 a.a. Molecular weight: 11862.52 Da Isoelectric Point: 6.2924
>NTDB_id=115080 X874_RS08540 WP_025248216.1 1827167..1827496(+) (comEA/comE1) [Mannheimia varigena USDA-ARS-USMARC-1312]
MKQMKTLALGLLMSLNTFAFAQTPPQIEQNSMPQTEQQVTQINTNAVNINTASAAELQDKLVGIGEKKAQAIVDYRTKNG
NFKSIEQLAEVSGIGQATVDKNRANIVLE
MKQMKTLALGLLMSLNTFAFAQTPPQIEQNSMPQTEQQVTQINTNAVNINTASAAELQDKLVGIGEKKAQAIVDYRTKNG
NFKSIEQLAEVSGIGQATVDKNRANIVLE
Nucleotide
Download Length: 330 bp
>NTDB_id=115080 X874_RS08540 WP_025248216.1 1827167..1827496(+) (comEA/comE1) [Mannheimia varigena USDA-ARS-USMARC-1312]
ATGAAACAAATGAAAACTCTCGCGTTAGGCCTATTAATGAGCTTAAATACATTCGCTTTTGCTCAAACTCCACCTCAAAT
TGAGCAGAATAGTATGCCTCAAACTGAGCAACAAGTAACACAAATAAATACCAATGCCGTAAACATCAACACCGCAAGTG
CTGCTGAGTTACAAGATAAACTAGTAGGTATTGGCGAGAAAAAAGCTCAAGCGATTGTCGATTACCGTACCAAAAATGGT
AATTTTAAAAGCATTGAGCAGCTTGCCGAAGTATCCGGTATTGGACAAGCAACGGTAGACAAAAATCGAGCAAATATCGT
TTTAGAGTAA
ATGAAACAAATGAAAACTCTCGCGTTAGGCCTATTAATGAGCTTAAATACATTCGCTTTTGCTCAAACTCCACCTCAAAT
TGAGCAGAATAGTATGCCTCAAACTGAGCAACAAGTAACACAAATAAATACCAATGCCGTAAACATCAACACCGCAAGTG
CTGCTGAGTTACAAGATAAACTAGTAGGTATTGGCGAGAAAAAAGCTCAAGCGATTGTCGATTACCGTACCAAAAATGGT
AATTTTAAAAGCATTGAGCAGCTTGCCGAAGTATCCGGTATTGGACAAGCAACGGTAGACAAAAATCGAGCAAATATCGT
TTTAGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
52.212 |
100 |
0.541 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
46.429 |
100 |
0.477 |
| comEA | Vibrio campbellii strain DS40M4 |
39.815 |
99.083 |
0.394 |
| comEA | Legionella pneumophila str. Paris |
40 |
91.743 |
0.367 |
| comEA | Legionella pneumophila strain ERS1305867 |
40 |
91.743 |
0.367 |
| comEA | Vibrio cholerae strain A1552 |
64.516 |
56.881 |
0.367 |
| comEA | Vibrio cholerae C6706 |
64.516 |
56.881 |
0.367 |