Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   KKQ79_RS12810 Genome accession   NZ_OU015319
Coordinates   2752407..2753756 (-) Length   449 a.a.
NCBI ID   WP_213190466.1    Uniprot ID   -
Organism   Cloacibacterium caeni isolate Isolate1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2747407..2758756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KKQ79_RS12785 - 2747734..2750118 (-) 2385 WP_213190462.1 M1 family metallopeptidase -
  KKQ79_RS12790 - 2750232..2750807 (-) 576 WP_104794212.1 HupE/UreJ family protein -
  KKQ79_RS12795 - 2750872..2751372 (+) 501 WP_213190463.1 DUF6702 family protein -
  KKQ79_RS12800 - 2751329..2751949 (-) 621 WP_213190464.1 ACP phosphodiesterase -
  KKQ79_RS12805 - 2751979..2752341 (-) 363 WP_213190465.1 four helix bundle protein -
  KKQ79_RS12810 radA 2752407..2753756 (-) 1350 WP_213190466.1 DNA repair protein RadA Machinery gene
  KKQ79_RS12815 - 2753863..2755470 (+) 1608 WP_213190467.1 CTP synthase -
  KKQ79_RS12820 yidC 2755618..2757423 (+) 1806 WP_213190468.1 membrane protein insertase YidC -
  KKQ79_RS12825 - 2757480..2758064 (-) 585 WP_213190469.1 ribonuclease HII -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 49804.82 Da        Isoelectric Point: 7.0018

>NTDB_id=1150795 KKQ79_RS12810 WP_213190466.1 2752407..2753756(-) (radA) [Cloacibacterium caeni isolate Isolate1]
MAKIKTAYYCQKCGTQYPQWHGQCKNCGEWNTLVEEIVEKKSSHYDILGSGKQKIINITEVETGTEIRLKTVSEELNRVL
GGGIVLGSVILIGGEPGIGKSTLLLQLALKMKKKILYVSGEESASQIKMRADRITDVQNPNCFLYTETSIEKILMEAKNL
QPDLMIVDSIQTLQSQLLESAAGTVSQIRECSGELIKFAKEKNIPVILVGHITKDGQIAGPKVLEHMVDVVLNFDGDRNH
LFRLLRAQKNRFGSTQEIGIYEMVTQGLKEIKNPSEILITKKFEELSGNAVAVTLEGNRPMLIEIQALVSTAVYGTPQRS
CTGFDSKRLNMLLAVLEKRAGFMLGAKDVFLNITGGIKTDDPALDLAVIAAVLSSNEDLAISEKYCFAGEIGLSGEIRPI
PQIEQRISEAEKLGYEKIFVSNLNKIPKRKFGIRIEEVSKIEEFHEKLF

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=1150795 KKQ79_RS12810 WP_213190466.1 2752407..2753756(-) (radA) [Cloacibacterium caeni isolate Isolate1]
GTGGCAAAAATAAAAACAGCATACTATTGTCAGAAATGTGGAACGCAATATCCGCAATGGCACGGACAATGCAAAAACTG
TGGAGAGTGGAATACTCTAGTAGAAGAAATCGTAGAAAAAAAATCTTCTCACTATGATATTCTAGGAAGCGGGAAACAAA
AAATCATCAATATTACCGAAGTAGAAACAGGAACAGAAATTCGTCTGAAAACCGTTTCAGAAGAGCTGAACCGTGTTTTA
GGAGGCGGAATTGTTCTAGGCTCTGTTATTCTCATTGGTGGAGAACCTGGAATTGGTAAATCTACGCTTCTACTACAACT
CGCCTTAAAAATGAAGAAGAAAATTCTGTATGTTTCTGGCGAAGAAAGTGCTTCGCAAATTAAAATGCGTGCCGACAGAA
TTACGGATGTTCAAAATCCAAACTGTTTCCTATATACCGAAACTTCTATCGAAAAAATATTGATGGAAGCCAAAAATCTT
CAGCCAGATTTGATGATTGTAGATTCTATTCAAACTTTACAATCTCAATTGCTAGAAAGTGCTGCAGGAACGGTTTCACA
GATTAGAGAATGTTCTGGAGAATTGATAAAATTTGCCAAAGAAAAAAATATTCCCGTTATTTTAGTAGGTCACATTACCA
AAGACGGACAAATTGCCGGCCCGAAAGTTCTGGAACACATGGTAGACGTAGTTCTTAATTTTGACGGAGACAGAAATCAC
CTTTTCAGATTATTAAGAGCTCAGAAAAACCGTTTTGGTTCTACTCAAGAAATAGGAATTTATGAAATGGTGACTCAAGG
TTTAAAAGAAATTAAAAATCCTTCGGAAATCTTAATCACCAAAAAATTTGAAGAACTTTCAGGAAACGCAGTTGCCGTTA
CTTTGGAAGGAAACAGGCCGATGCTTATAGAAATTCAGGCTTTAGTTTCCACAGCAGTCTATGGAACTCCACAACGCAGT
TGCACTGGTTTTGATAGCAAAAGATTGAACATGCTTCTTGCTGTTTTAGAAAAACGCGCTGGTTTTATGTTGGGTGCAAA
AGACGTTTTCCTGAACATTACCGGTGGAATAAAAACAGATGATCCTGCACTAGATTTAGCGGTAATTGCAGCTGTTTTGA
GCAGTAACGAAGATTTAGCCATTTCGGAGAAATATTGTTTTGCGGGCGAAATAGGTTTGAGTGGAGAAATTAGACCGATT
CCTCAAATTGAACAAAGAATTTCGGAAGCTGAAAAATTGGGCTATGAAAAGATTTTTGTTTCCAACCTCAACAAAATTCC
TAAAAGAAAATTCGGGATTAGAATAGAAGAAGTGAGTAAAATAGAAGAGTTCCACGAAAAACTTTTTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(67-217)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(338-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae D39

47.807

100

0.486
  radA Streptococcus pneumoniae Rx1

47.807

100

0.486
  radA Streptococcus pneumoniae R6

47.807

100

0.486
  radA Streptococcus pneumoniae TIGR4

47.807

100

0.486
  radA Streptococcus mitis NCTC 12261

47.797

100

0.483
  radA Bacillus subtilis subsp. subtilis str. 168

47.788

100

0.481
  radA Streptococcus mitis SK321

47.577

100

0.481

Multiple sequence alignment