Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   B6E82_RS01595 Genome accession   NZ_LT999999
Coordinates   357547..358908 (+) Length   453 a.a.
NCBI ID   WP_035406143.1    Uniprot ID   -
Organism   Chlamydia suis isolate 4-29b     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 352547..363908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B6E82_RS01570 accD 352649..353542 (-) 894 WP_080128669.1 acetyl-CoA carboxylase, carboxyltransferase subunit beta -
  B6E82_RS01575 - 353613..354233 (-) 621 WP_080123739.1 superoxide dismutase -
  B6E82_RS01580 - 354365..356146 (-) 1782 WP_080132063.1 phospho-sugar mutase -
  B6E82_RS01585 - 356293..356760 (-) 468 WP_080123696.1 DUF5070 domain-containing protein -
  B6E82_RS01590 rnc 356868..357563 (+) 696 WP_080124329.1 ribonuclease III -
  B6E82_RS01595 radA 357547..358908 (+) 1362 WP_035406143.1 DNA repair protein RadA Machinery gene
  B6E82_RS01600 - 358886..359641 (+) 756 WP_080121354.1 hydroxymethylbilane synthase -
  B6E82_RS01605 - 359714..360271 (+) 558 WP_051581860.1 hypothetical protein -
  B6E82_RS01610 - 360331..360675 (+) 345 WP_143290970.1 hypothetical protein -
  B6E82_RS01615 pknD 360746..363538 (-) 2793 WP_080132065.1 serine/threonine-protein kinase PknD -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49637.14 Da        Isoelectric Point: 7.7237

>NTDB_id=1150552 B6E82_RS01595 WP_035406143.1 357547..358908(+) (radA) [Chlamydia suis isolate 4-29b]
MTTKTKTQWGCTTCGSYSPKWLGQCPGCLNWNTLVEEKLPYKPNTSSLPSSTAPIPLNTVEFQEEIRLHTRAPGWNRLLG
GGTVRGSLTLLGGEPGIGKSTLLLQISSQFAQQGYSVLYVCGEESVSQTSLRAQRLNISSSNIFLFPETNLDDIKRQITN
LNPDILVIDSIQIIFSPSLSSAPGSVAQVRETTAELMHLAKQKQITTFIIGHVTKSGEIAGPRILEHLVDTVLYFEGNAH
ANYRMIRSVKNRFGPTNELLILAMETNGLREVENPSGLFLQEKIVETTGSTIIPIVEGSETLLVEMQALVSSSPFSNPVR
KTSGFDPNRFSLLLAVLEKRANVKLYTSDVFLSIAGGLKISQPSADLGAVLSVVSSLYNRFLPKNYTYTGEIGLGGEIRH
VTHIESRIKESILMGFKGIVLPFGQMKGLPEEFLDQIDIIGVKTIKDAVRLLQ

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1150552 B6E82_RS01595 WP_035406143.1 357547..358908(+) (radA) [Chlamydia suis isolate 4-29b]
ATGACAACAAAAACTAAAACACAATGGGGTTGTACGACATGCGGCTCTTATTCTCCAAAATGGCTAGGACAATGTCCCGG
GTGTCTTAACTGGAATACTTTGGTCGAAGAAAAACTTCCTTATAAACCAAACACCTCGTCCCTACCCAGCTCCACAGCCC
CAATACCTCTAAACACTGTAGAATTTCAGGAAGAGATCCGACTGCATACTCGTGCTCCGGGATGGAATCGCCTTCTTGGA
GGAGGGACTGTTCGCGGTAGTTTAACCCTGCTAGGAGGAGAGCCCGGCATTGGAAAATCCACCCTATTGCTTCAAATTTC
TTCTCAATTTGCCCAACAAGGCTATTCAGTATTGTATGTTTGTGGGGAAGAATCCGTGTCCCAAACTTCATTACGCGCAC
AACGACTAAACATCTCTAGCAGCAATATTTTTCTATTCCCAGAAACAAACTTAGACGATATCAAACGACAGATCACAAAT
CTTAATCCAGATATCTTAGTCATAGATTCTATTCAGATCATTTTTTCTCCATCGCTAAGCTCTGCTCCAGGATCTGTTGC
CCAAGTCAGGGAGACCACAGCAGAACTTATGCATCTCGCGAAACAAAAACAGATAACGACCTTTATTATTGGGCACGTTA
CCAAATCAGGAGAGATCGCAGGACCTCGTATTCTTGAACATTTAGTAGATACAGTTCTTTATTTCGAAGGCAATGCACAT
GCCAATTATCGCATGATCCGCTCCGTAAAAAACCGCTTCGGCCCAACTAACGAGTTACTGATTCTTGCCATGGAGACGAA
TGGATTGCGTGAAGTAGAAAATCCTTCGGGACTTTTTTTACAAGAAAAAATTGTAGAAACAACCGGCTCTACCATTATTC
CTATTGTAGAGGGATCAGAAACGCTTCTTGTCGAAATGCAAGCGCTTGTTTCCTCTTCTCCATTCTCAAACCCCGTACGA
AAAACTTCTGGATTTGACCCCAACCGATTCTCTTTGCTCTTAGCGGTTTTAGAAAAAAGAGCAAATGTTAAATTATACAC
TTCCGACGTCTTTCTCTCTATAGCAGGAGGTTTAAAAATCTCACAACCTTCAGCAGATTTGGGAGCGGTGCTATCGGTCG
TTTCTTCCCTATATAATCGCTTTTTACCTAAAAACTATACCTATACTGGGGAAATCGGACTGGGAGGGGAGATTCGGCAC
GTTACACACATAGAATCCCGCATAAAAGAGAGTATTCTTATGGGATTTAAAGGCATTGTTCTGCCTTTCGGGCAAATGAA
AGGTTTACCTGAAGAATTTTTGGATCAAATTGACATTATTGGAGTAAAAACAATCAAAGATGCTGTCCGCTTATTACAAT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(67-217)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(360-450)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.684

100

0.49
  radA Streptococcus pneumoniae Rx1

47.566

99.779

0.475
  radA Streptococcus pneumoniae D39

47.566

99.779

0.475
  radA Streptococcus pneumoniae R6

47.566

99.779

0.475
  radA Streptococcus pneumoniae TIGR4

47.566

99.779

0.475
  radA Streptococcus mitis NCTC 12261

47.345

99.779

0.472
  radA Streptococcus mitis SK321

47.111

99.338

0.468

Multiple sequence alignment