Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   B6E92_RS01610 Genome accession   NZ_LT999998
Coordinates   356453..357814 (+) Length   453 a.a.
NCBI ID   WP_080128671.1    Uniprot ID   -
Organism   Chlamydia suis isolate 3-25b     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 351453..362814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B6E92_RS01585 accD 351555..352448 (-) 894 WP_080128669.1 acetyl-CoA carboxylase, carboxyltransferase subunit beta -
  B6E92_RS01590 - 352519..353139 (-) 621 WP_080123739.1 superoxide dismutase -
  B6E92_RS01595 - 353271..355052 (-) 1782 WP_080128670.1 phospho-sugar mutase -
  B6E92_RS01600 - 355199..355666 (-) 468 WP_080126605.1 DUF5070 domain-containing protein -
  B6E92_RS01605 rnc 355774..356469 (+) 696 WP_080126606.1 ribonuclease III -
  B6E92_RS01610 radA 356453..357814 (+) 1362 WP_080128671.1 DNA repair protein RadA Machinery gene
  B6E92_RS01615 - 357792..358547 (+) 756 WP_080121354.1 hydroxymethylbilane synthase -
  B6E92_RS01620 - 358620..359177 (+) 558 WP_080128672.1 hypothetical protein -
  B6E92_RS01625 - 359237..359581 (+) 345 WP_080128673.1 hypothetical protein -
  B6E92_RS01630 pknD 359652..362444 (-) 2793 WP_080128674.1 serine/threonine-protein kinase PknD -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49624.14 Da        Isoelectric Point: 7.7237

>NTDB_id=1150546 B6E92_RS01610 WP_080128671.1 356453..357814(+) (radA) [Chlamydia suis isolate 3-25b]
MTTKTKTQWGCTTCGSYSPKWLGQCPGCLNWNTLVEEKLPYKPNTTSLPSSTAPIPLNTVEFQEEIRLHTRAPGWNRLLG
GGTVRGSLTLLGGEPGIGKSTLLLQISSQFAQQGYSVLYVCGEESVSQTSLRAQRLNISSSNIFLFPETNLDDIKRQITN
LSPDILVIDSIQIIFSPSLSSAPGSVAQVRETTAELMHLAKQKQITTFIIGHVTKSGEIAGPRILEHLVDTVLYFEGNAH
ANYRMIRSVKNRFGPTNELLILAMETNGLREVENPSGLFLQEKIVETTGSTIIPIVEGSETLLVEMQALVSSSPFSNPVR
KTSGFDPNRFSLLLAVLEKRANVKLYTSDVFLSIAGGLKISQPSADLGAVLSVVSSLYNRFLPKNYTYTGEIGLGGEIRH
VTHIESRIKESILMGFKGIVLPFGQMKGLPEEFLDQIDIIGVKTIKDAVRLLQ

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1150546 B6E92_RS01610 WP_080128671.1 356453..357814(+) (radA) [Chlamydia suis isolate 3-25b]
ATGACAACAAAAACTAAAACACAATGGGGTTGTACGACCTGCGGCTCTTATTCTCCAAAATGGCTTGGACAATGTCCCGG
GTGTCTTAACTGGAATACTTTGGTCGAAGAAAAACTTCCTTATAAACCAAACACCACATCCCTACCCAGCTCCACAGCCC
CAATACCTCTAAACACTGTAGAATTTCAGGAAGAGATCCGACTGCATACTCGCGCTCCAGGATGGAATCGCCTTCTTGGA
GGAGGGACTGTTCGCGGTAGTTTAACCCTGCTAGGAGGAGAGCCCGGCATTGGAAAATCCACCCTATTGCTTCAAATTTC
TTCTCAATTTGCCCAACAAGGCTATTCAGTATTGTATGTTTGTGGGGAAGAATCCGTGTCCCAAACTTCATTACGCGCAC
AACGACTAAACATCTCTAGCAGCAATATTTTTCTATTCCCAGAAACAAACTTAGACGATATCAAACGACAGATCACAAAT
CTTTCTCCAGATATCTTAGTCATAGATTCTATTCAGATCATTTTTTCTCCATCGCTAAGCTCTGCTCCAGGATCTGTTGC
CCAAGTCAGGGAGACCACAGCAGAACTTATGCATCTCGCGAAACAAAAACAGATAACGACCTTTATTATTGGGCACGTTA
CCAAATCAGGAGAGATCGCAGGACCTCGTATTCTTGAACATTTAGTAGATACAGTTCTTTATTTCGAAGGCAATGCACAT
GCCAATTATCGCATGATCCGCTCCGTAAAAAACCGCTTCGGCCCAACTAACGAGTTACTGATTCTTGCCATGGAGACGAA
TGGATTGCGTGAAGTAGAAAATCCTTCGGGACTTTTTTTACAAGAAAAAATTGTAGAAACAACCGGCTCTACCATTATTC
CTATTGTAGAGGGATCAGAAACGCTTCTTGTCGAAATGCAAGCACTTGTTTCCTCATCTCCATTCTCAAACCCCGTACGA
AAAACTTCTGGATTTGACCCCAACCGATTCTCTTTGCTCTTAGCGGTTTTAGAAAAAAGAGCAAATGTTAAATTATACAC
TTCCGATGTCTTTCTCTCTATAGCGGGAGGTTTAAAAATCTCACAACCTTCAGCAGATTTGGGAGCGGTGCTATCGGTCG
TTTCTTCCCTATATAATCGCTTTTTACCTAAAAACTATACCTATACTGGGGAAATCGGACTGGGAGGGGAGATTCGGCAC
GTTACACACATAGAATCCCGCATAAAAGAGAGTATTCTTATGGGATTTAAAGGCATTGTTCTGCCTTTCGGGCAAATGAA
AGGTTTACCTGAAGAATTTTTGGATCAAATTGACATTATTGGAGTAAAAACAATCAAAGATGCTGTCCGCTTATTACAAT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(67-217)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(360-450)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.465

100

0.488
  radA Streptococcus pneumoniae Rx1

47.566

99.779

0.475
  radA Streptococcus pneumoniae D39

47.566

99.779

0.475
  radA Streptococcus pneumoniae R6

47.566

99.779

0.475
  radA Streptococcus pneumoniae TIGR4

47.566

99.779

0.475
  radA Streptococcus mitis NCTC 12261

47.345

99.779

0.472
  radA Streptococcus mitis SK321

47.111

99.338

0.468

Multiple sequence alignment