Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   DYY94_RS13200 Genome accession   NZ_LT996890
Coordinates   2555843..2556289 (+) Length   148 a.a.
NCBI ID   WP_001788899.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 24117-SCV     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2550843..2561289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DYY94_RS13175 - 2550935..2551558 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  DYY94_RS13180 - 2551853..2553499 (+) 1647 WP_000277718.1 IS1182 family transposase -
  DYY94_RS13185 comGA 2553524..2554498 (+) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  DYY94_RS13190 comGB 2554470..2555540 (+) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  DYY94_RS13195 comGC 2555554..2555865 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  DYY94_RS13200 comGD 2555843..2556289 (+) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  DYY94_RS13205 comGE 2556276..2556575 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  DYY94_RS13210 comGF 2556493..2556990 (+) 498 WP_029642894.1 competence type IV pilus minor pilin ComGF Machinery gene
  DYY94_RS13215 - 2557087..2557233 (+) 147 WP_001789879.1 hypothetical protein -
  DYY94_RS13220 - 2557223..2557747 (+) 525 WP_001015123.1 shikimate kinase -
  DYY94_RS13225 gcvT 2557906..2558997 (+) 1092 WP_000093348.1 glycine cleavage system aminomethyltransferase GcvT -
  DYY94_RS13230 gcvPA 2559017..2560363 (+) 1347 WP_000019689.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=1150499 DYY94_RS13200 WP_001788899.1 2555843..2556289(+) (comGD) [Staphylococcus aureus isolate 24117-SCV]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=1150499 DYY94_RS13200 WP_001788899.1 2555843..2556289(+) (comGD) [Staphylococcus aureus isolate 24117-SCV]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGTATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

100

100

1
  comGD Staphylococcus aureus N315

100

100

1

Multiple sequence alignment