Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   BTBSAS_RS03655 Genome accession   NZ_LT993737
Coordinates   749277..750959 (+) Length   560 a.a.
NCBI ID   WP_069118890.1    Uniprot ID   -
Organism   Brochothrix thermosphacta isolate CD 337     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 744277..755959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTBSAS_RS03630 (BTCD_0744) xseB 744782..745018 (+) 237 WP_029091145.1 exodeoxyribonuclease VII small subunit -
  BTBSAS_RS03635 (BTCD_0745) - 745015..745896 (+) 882 WP_029091146.1 polyprenyl synthetase family protein -
  BTBSAS_RS03640 (BTCD_0746) dxs 745922..747709 (+) 1788 WP_069118892.1 1-deoxy-D-xylulose-5-phosphate synthase -
  BTBSAS_RS03645 (BTCD_0747) - 747723..748547 (+) 825 WP_069118891.1 TlyA family RNA methyltransferase -
  BTBSAS_RS03650 (BTCD_0748) ahrC 748797..749246 (+) 450 WP_029091149.1 transcriptional regulator AhrC/ArgR -
  BTBSAS_RS03655 (BTCD_0749) recN 749277..750959 (+) 1683 WP_069118890.1 DNA repair protein RecN Machinery gene
  BTBSAS_RS03660 (BTCD_0750) buk 751103..752203 (+) 1101 WP_069118889.1 butyrate kinase -
  BTBSAS_RS13040 - 752278..752358 (-) 81 WP_414973545.1 hypothetical protein -
  BTBSAS_RS03670 (BTCD_0751) gndA 752633..754048 (+) 1416 WP_069118888.1 NADP-dependent phosphogluconate dehydrogenase -

Sequence

Protein


Download         Length: 560 a.a.        Molecular weight: 63345.83 Da        Isoelectric Point: 5.0123

>NTDB_id=1150382 BTBSAS_RS03655 WP_069118890.1 749277..750959(+) (recN) [Brochothrix thermosphacta isolate CD 337]
MLQELSIRHLAIIEEISLSFKKGLTVLTGETGAGKSIIIDALGLIVGGRASNDLIRHGADKADLEALFTIEKNKRAHSVL
EELGIEVEDEMVVLHRTLMRSGKNVCRINGKLVTTTNLRDVGETLLDIHSQHESQDLMNDAHHIYLIDQFAAEKIAEPLK
AYQLLYAELKNKRQEFNRFNKNEQELAQRIDMLHFQNKELEAANLVLGEEEELAAERSLLANYEKINHNVEASYDLLQGE
QSTLDQVAKVMNHLTAIQEVDGRYKEWFETVQTAYFSLSDVASDLNQELSTLEYNPEQLNNIETRMDIINQLKRKYGDSV
AEMMAYHEKISQEIEHLEHSESHSEQLQKEIEIVNEKLQLLANDLTVIRQQAAEELTVSIHDEFKELYMDKAIFKVNFET
QELGERGNNRIQFYTSTNPGEPLKPLHKIASGGELSRMMLAMKTIFSKHQGITSIIFDEVDTGVSGRVAQAIGQKIYSVS
VGSQVLCISHLPQVAAMADNHYHIEKTVSASRTRTTVSELSLDKRVAEIAMMMSGVEMTTSTEMHARELIQQSEKMKNIG

Nucleotide


Download         Length: 1683 bp        

>NTDB_id=1150382 BTBSAS_RS03655 WP_069118890.1 749277..750959(+) (recN) [Brochothrix thermosphacta isolate CD 337]
ATGCTCCAAGAATTATCGATACGTCATCTTGCAATCATCGAGGAAATTTCATTATCTTTTAAAAAAGGTCTTACAGTTTT
AACTGGTGAAACAGGTGCCGGAAAGTCAATTATTATTGATGCATTGGGACTTATTGTTGGTGGTCGAGCATCGAACGATT
TAATCCGACATGGTGCAGATAAAGCCGATTTAGAAGCATTGTTTACCATTGAAAAAAATAAGCGTGCCCATTCTGTTCTA
GAAGAATTAGGGATTGAAGTCGAGGATGAGATGGTCGTTTTACATCGAACATTGATGAGAAGTGGTAAAAATGTCTGTCG
AATCAATGGGAAATTAGTGACAACAACTAATTTGCGTGATGTAGGCGAGACGTTATTAGATATTCATTCCCAACATGAGA
GTCAAGATTTAATGAATGATGCTCATCATATCTATTTAATAGATCAGTTTGCAGCAGAAAAAATAGCTGAACCTTTAAAA
GCATACCAATTACTCTATGCCGAGTTGAAAAATAAACGTCAAGAATTTAATCGTTTTAATAAAAACGAACAAGAATTGGC
ACAACGAATTGATATGTTACACTTTCAAAATAAAGAATTAGAAGCAGCTAATCTCGTATTAGGTGAAGAAGAAGAGTTGG
CAGCAGAACGTTCGTTATTGGCAAATTATGAAAAAATAAATCATAATGTTGAAGCAAGTTATGACTTATTACAAGGTGAG
CAGTCAACGTTAGATCAAGTAGCAAAAGTGATGAATCATTTAACTGCAATTCAAGAAGTTGATGGACGTTACAAAGAATG
GTTTGAAACAGTGCAAACTGCTTATTTCAGCTTATCCGATGTTGCGAGCGATTTAAATCAAGAACTGTCAACATTGGAAT
ATAATCCTGAGCAATTAAATAATATAGAAACACGGATGGATATCATCAACCAATTAAAACGTAAATATGGTGATTCAGTT
GCTGAAATGATGGCTTACCATGAAAAAATAAGCCAAGAAATTGAACACTTAGAACATAGTGAGTCACACTCAGAACAATT
GCAAAAAGAAATCGAAATCGTGAATGAGAAGTTACAACTCCTAGCGAATGATTTAACCGTTATACGCCAGCAGGCAGCTG
AAGAGTTAACTGTATCAATTCATGATGAATTTAAAGAACTTTACATGGATAAAGCAATTTTTAAAGTGAATTTTGAAACA
CAAGAGTTAGGTGAGCGCGGTAATAATCGTATTCAATTCTATACATCTACTAACCCTGGTGAACCTTTGAAACCTTTGCA
TAAAATTGCATCAGGTGGGGAATTGTCACGGATGATGTTAGCAATGAAAACCATCTTTTCTAAGCATCAAGGTATTACAA
GCATCATTTTTGATGAAGTTGATACCGGTGTTAGCGGTCGAGTGGCACAAGCGATTGGTCAAAAGATATACTCTGTGTCA
GTAGGATCACAAGTGTTGTGTATTTCACATTTACCACAGGTTGCAGCAATGGCAGACAACCATTATCATATTGAAAAAAC
TGTCTCTGCATCACGTACACGTACGACGGTTTCTGAACTGTCGTTGGATAAACGTGTTGCTGAAATAGCGATGATGATGA
GTGGTGTTGAAATGACAACTTCAACTGAGATGCATGCACGTGAACTGATCCAACAATCAGAAAAAATGAAGAATATTGGC
TAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

47.569

100

0.489

Multiple sequence alignment