Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   DG357_RS08095 Genome accession   NZ_LT992502
Coordinates   1686540..1687166 (+) Length   208 a.a.
NCBI ID   WP_088204954.1    Uniprot ID   -
Organism   Enterobacter bugandensis isolate EB-247     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1681540..1692166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DG357_RS08075 - 1681941..1683701 (-) 1761 WP_045261706.1 Lon protease family protein -
  DG357_RS08080 matP 1683887..1684339 (+) 453 WP_023332611.1 macrodomain Ter protein MatP -
  DG357_RS08085 ompA 1684403..1685458 (-) 1056 WP_108780329.1 porin OmpA -
  DG357_RS08090 sulA 1685813..1686322 (-) 510 WP_088204953.1 SOS-induced cell division inhibitor SulA -
  DG357_RS08095 sxy/tfoX 1686540..1687166 (+) 627 WP_088204954.1 TfoX/Sxy family DNA transformation protein Regulator
  DG357_RS08100 yccS 1687123..1689285 (-) 2163 WP_045261705.1 YccS family putative transporter -
  DG357_RS08105 - 1689305..1689751 (-) 447 WP_041910601.1 YccF domain-containing protein -
  DG357_RS08110 helD 1689875..1691929 (+) 2055 WP_088204955.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24002.64 Da        Isoelectric Point: 9.2151

>NTDB_id=1150353 DG357_RS08095 WP_088204954.1 1686540..1687166(+) (sxy/tfoX) [Enterobacter bugandensis isolate EB-247]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSEGELYLRACEESAKYCVKNAASFLTLMKRGRPVLLN
YYRVDEGLWQDRERLLQLSTFALNAARKERYQRHQRNRLKDLPNLTFQLEVLLFEAGITNEETLRALGARESWLKMRAKN
KALSIKVLFALEGAIEGLHEAALPAGIRRELTEWFNALPEPLENHSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=1150353 DG357_RS08095 WP_088204954.1 1686540..1687166(+) (sxy/tfoX) [Enterobacter bugandensis isolate EB-247]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTGTCACCGCTGGGTGAAATTCATCATCGCGCGCT
GTTCGGCGGCTATACCCTGGCAGTGGATGATGCGGTTTTTGCCATGGTGTCAGAAGGTGAGCTCTACCTCCGTGCCTGTG
AAGAAAGTGCGAAATACTGTGTGAAAAATGCCGCGTCTTTTTTGACCCTGATGAAGCGGGGCCGTCCGGTGCTTCTCAAC
TATTACCGGGTGGATGAGGGGCTATGGCAGGACAGGGAGCGTCTGCTTCAGCTCTCCACTTTCGCACTTAATGCGGCAAG
AAAAGAGCGTTACCAGCGGCATCAGCGCAATCGACTTAAGGACCTGCCAAACCTGACCTTTCAGCTGGAAGTGTTGCTCT
TTGAAGCGGGCATCACCAACGAAGAAACACTGCGGGCGCTTGGCGCAAGGGAGAGCTGGCTGAAGATGCGGGCGAAAAAT
AAAGCGCTGAGTATCAAAGTGCTATTCGCGCTGGAAGGAGCGATCGAGGGGCTGCATGAGGCGGCACTCCCGGCCGGCAT
TCGCCGGGAGTTGACGGAGTGGTTTAATGCGCTGCCTGAGCCACTGGAGAATCACTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.586

95.192

0.558

Multiple sequence alignment