Detailed information NTG1150333

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: DG169_RS12050
• Genome accession: NZ_LT992492
• Coordinates: 2575891..2576898 (-)
• Length: 335 a.a.
• NCBI ID: WP_000116737.1
• Uniprot ID: O51804
• Organism: Vibrio cholerae strain 4295STDY6534248
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2570891..2581898

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DG169_RS12040 (SAMEA4374368_02355)	cysM	2572055..2572942 (+)	888	WP_001279365.1	cysteine synthase CysM	-
DG169_RS12045 (SAMEA4374368_02356)	mutS	2573210..2575798 (+)	2589	WP_001894770.1	DNA mismatch repair protein MutS	-
DG169_RS12050 (SAMEA4374368_02357)	rpoS	2575891..2576898 (-)	1008	WP_000116737.1	RNA polymerase sigma factor RpoS	Regulator
DG169_RS12055 (SAMEA4374368_02358)	nlpD	2576972..2577907 (-)	936	WP_000177568.1	murein hydrolase activator NlpD	-
DG169_RS12060 (SAMEA4374368_02359)	-	2577907..2578533 (-)	627	WP_000002982.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
DG169_RS12065 (SAMEA4374368_02360)	surE	2578526..2579278 (-)	753	WP_000698379.1	5'/3'-nucleotidase SurE	-
DG169_RS12070 (SAMEA4374368_02361)	truD	2579280..2580365 (-)	1086	WP_000129752.1	tRNA pseudouridine(13) synthase TruD	-
DG169_RS12075 (SAMEA4374368_02362)	ispF	2580395..2580871 (-)	477	WP_000619209.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
DG169_RS12080 (SAMEA4374368_02363)	ispD	2580868..2581566 (-)	699	WP_001061951.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
DG169_RS12085 (SAMEA4374368_02364)	ftsB	2581563..2581847 (-)	285	WP_001263189.1	cell division protein FtsB	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38534.39 Da
• Isoelectric Point: 4.3648

>NTDB_id=1150333 DG169_RS12050 WP_000116737.1 2575891..2576898(-) (rpoS) [Vibrio cholerae strain 4295STDY6534248]
MSVSNTVTKVEEFDFEDEALEVLETDAELTSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide

• Length: 1008 bp

>NTDB_id=1150333 DG169_RS12050 WP_000116737.1 2575891..2576898(-) (rpoS) [Vibrio cholerae strain 4295STDY6534248]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATGC
CGAGCTCACCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGAAGACGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGATGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACACCAGAAGAAATTGCTCTTGAGTTAGACCGACCTGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGGGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCTCACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCGCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATCCAAGTGGAAGGTCTACGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCGCTGTTTAACGTCGAATACGACAACTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (263-316)

• Sigma-70 region 3 (Sigma70_r3) (175-249)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (57-90)

• Sigma-70 region 2 (Sigma70_r2) (95-164)

3D structure

• AlphaFold DB: O51804

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	100	100	1