Detailed information NTG1150284

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HUW69_RS11545
• Genome accession: NZ_LT992490
• Coordinates: 2586530..2587537 (-)
• Length: 335 a.a.
• NCBI ID: WP_000116733.1
• Uniprot ID: A0AAW4H1Y0
• Organism: Vibrio cholerae strain 4295STDY6534200
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2581530..2592537

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HUW69_RS11535 (SAMEA4374365_02349)	cysM	2582693..2583580 (+)	888	WP_002031018.1	cysteine synthase CysM	-
HUW69_RS11540 (SAMEA4374365_02350)	mutS	2583848..2586436 (+)	2589	WP_002031016.1	DNA mismatch repair protein MutS	-
HUW69_RS11545 (SAMEA4374365_02351)	rpoS	2586530..2587537 (-)	1008	WP_000116733.1	RNA polymerase sigma factor RpoS	Regulator
HUW69_RS11550 (SAMEA4374365_02352)	-	2587611..2588546 (-)	936	WP_000177566.1	peptidoglycan DD-metalloendopeptidase family protein	-
HUW69_RS11555 (SAMEA4374365_02353)	-	2588546..2589172 (-)	627	WP_000002982.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
HUW69_RS11560 (SAMEA4374365_02354)	surE	2589165..2589917 (-)	753	WP_000698379.1	5'/3'-nucleotidase SurE	-
HUW69_RS11565 (SAMEA4374365_02355)	truD	2589919..2591004 (-)	1086	WP_174566575.1	tRNA pseudouridine(13) synthase TruD	-
HUW69_RS11570 (SAMEA4374365_02356)	ispF	2591034..2591510 (-)	477	WP_000619207.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HUW69_RS11575 (SAMEA4374365_02357)	ispD	2591507..2592205 (-)	699	WP_001061959.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
HUW69_RS11580 (SAMEA4374365_02358)	ftsB	2592202..2592486 (-)	285	WP_001263189.1	cell division protein FtsB	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38476.31 Da
• Isoelectric Point: 4.3648

>NTDB_id=1150284 HUW69_RS11545 WP_000116733.1 2586530..2587537(-) (rpoS) [Vibrio cholerae strain 4295STDY6534200]
MSVSNTVTKVEEFDFEDEALEVLETDAELASDEELVAVEGASEDAREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide

• Length: 1008 bp

>NTDB_id=1150284 HUW69_RS11545 WP_000116733.1 2586530..2587537(-) (rpoS) [Vibrio cholerae strain 4295STDY6534200]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATGC
CGAGCTCGCCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGAAGATGCTCGCGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACCGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGCGATGAAGCCGCACGCAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCTATCCATGTCGTCAAAGAGCTGAATATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACACCAGAAGAAATTGCTCTTGAGTTAGACCGACCTGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGGGATGGAGATAAGGCACTGCTGGATATTTTGCCT
GACTCTCACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCTCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATCCAAGTGGAAGGTCTACGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCGCTGTTTAACGTTGAATACGACAACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (175-249)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (57-90)

• Sigma-70, region 4 (Sigma70_r4) (263-316)

• Sigma-70 region 2 (Sigma70_r2) (95-164)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	99.403	100	0.994