Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HUW69_RS11405 Genome accession   NZ_LT992490
Coordinates   2559849..2560367 (-) Length   172 a.a.
NCBI ID   WP_002031051.1    Uniprot ID   -
Organism   Vibrio cholerae strain 4295STDY6534200     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2554849..2565367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUW69_RS11380 (SAMEA4374365_02318) rimM 2554958..2555512 (-) 555 WP_002031055.1 ribosome maturation factor RimM -
  HUW69_RS11385 (SAMEA4374365_02319) rpsP 2555540..2555788 (-) 249 WP_000256449.1 30S ribosomal protein S16 -
  HUW69_RS11390 (SAMEA4374365_02320) ffh 2556024..2557409 (-) 1386 WP_002031053.1 signal recognition particle protein -
  HUW69_RS11395 (SAMEA4374365_02321) - 2557622..2558416 (+) 795 WP_000369277.1 inner membrane protein YpjD -
  HUW69_RS11400 (SAMEA4374365_02322) - 2558499..2559779 (+) 1281 WP_000340993.1 HlyC/CorC family transporter -
  HUW69_RS11405 (SAMEA4374365_02323) luxS 2559849..2560367 (-) 519 WP_002031051.1 S-ribosylhomocysteine lyase Regulator
  HUW69_RS11410 (SAMEA4374365_02324) gshA 2560614..2562185 (-) 1572 WP_002031050.1 glutamate--cysteine ligase -
  HUW69_RS11415 (SAMEA4374365_02325) - 2562297..2565152 (-) 2856 WP_002031047.1 M16 family metallopeptidase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19110.93 Da        Isoelectric Point: 5.2199

>NTDB_id=1150281 HUW69_RS11405 WP_002031051.1 2559849..2560367(-) (luxS) [Vibrio cholerae strain 4295STDY6534200]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSERGIHTLEHLYAGFMRNHLNGSQVEIIDISP
MGCRTGFYMSLIGAPTEQQVAQAWLAAMQDVLKVESQEQIPELNEYQCGTAAMHSLEEAKTIAKNVIAAGISVNRNDELA
LPESMLNELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1150281 HUW69_RS11405 WP_002031051.1 2559849..2560367(-) (luxS) [Vibrio cholerae strain 4295STDY6534200]
ATGCCATTATTAGACAGTTTTACCGTCGATCATACCCGTATGAATGCACCGGCGGTGCGTGTTGCGAAAACCATGCAAAC
CCCAAAAGGGGATACGATTACCGTATTTGATTTGCGTTTTACTATGCCAAACAAAGATATCTTGTCTGAGCGCGGTATCC
ATACTCTAGAGCATCTCTACGCGGGCTTTATGCGTAATCACCTCAACGGCAGCCAAGTGGAGATCATCGATATTTCACCA
ATGGGTTGCCGTACTGGTTTCTATATGAGCTTGATTGGTGCGCCGACAGAGCAGCAAGTGGCACAAGCATGGCTAGCCGC
AATGCAAGATGTGTTGAAAGTAGAAAGCCAAGAGCAAATTCCTGAGCTGAATGAGTACCAGTGCGGCACTGCGGCGATGC
ACTCGCTCGAAGAAGCCAAAACGATTGCGAAAAACGTGATTGCGGCAGGGATCTCGGTTAACCGTAACGATGAGTTGGCG
CTACCTGAATCTATGCTCAATGAGCTGAAGGTTCACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

99.419

100

0.994

Multiple sequence alignment