Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   HUW69_RS07795 Genome accession   NZ_LT992490
Coordinates   1746709..1748133 (+) Length   474 a.a.
NCBI ID   WP_001183696.1    Uniprot ID   -
Organism   Vibrio cholerae strain 4295STDY6534200     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1741709..1753133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUW69_RS07770 (SAMEA4374365_01579) cobU 1742010..1742549 (-) 540 WP_029628243.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -
  HUW69_RS07775 (SAMEA4374365_01580) - 1742558..1743343 (-) 786 WP_000718971.1 adenosylcobinamide-GDP ribazoletransferase -
  HUW69_RS07780 (SAMEA4374365_01581) cobT 1743343..1744368 (-) 1026 WP_000887078.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  HUW69_RS07785 - 1744841..1745014 (-) 174 Protein_1506 peptide-methionine (R)-S-oxide reductase -
  HUW69_RS07790 (SAMEA4374365_01582) - 1745192..1746565 (+) 1374 WP_000117942.1 L-cystine transporter -
  HUW69_RS07795 (SAMEA4374365_01583) sbcB 1746709..1748133 (+) 1425 WP_001183696.1 exodeoxyribonuclease I Machinery gene
  HUW69_RS07800 (SAMEA4374365_01584) - 1748165..1748539 (+) 375 WP_001881007.1 CidA/LrgA family protein -
  HUW69_RS07805 (SAMEA4374365_01585) - 1748530..1749204 (+) 675 WP_000266241.1 LrgB family protein -
  HUW69_RS07810 (SAMEA4374365_01586) cdd 1749374..1750261 (+) 888 WP_001245905.1 cytidine deaminase -
  HUW69_RS07815 (SAMEA4374365_01587) - 1750420..1751295 (+) 876 WP_000462869.1 AEC family transporter -
  HUW69_RS07820 (SAMEA4374365_01588) purT 1751449..1752624 (+) 1176 WP_174566516.1 phosphoribosylglycinamide formyltransferase 2 -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54520.86 Da        Isoelectric Point: 5.9815

>NTDB_id=1150273 HUW69_RS07795 WP_001183696.1 1746709..1748133(+) (sbcB) [Vibrio cholerae strain 4295STDY6534200]
MQQEHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGITPQKANSQGLAEP
EFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFVDPYAWSWQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHY
TSWIVPIAWHPTNQNAVIVVDLGKDPQPLMDLDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAQ
KIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFNQESDVDSQLYAGFFSPADRAAMEIIRTTAPENLGSLAIQVADK
RIEPLLFRYRARHYPHTLTDTEQRRWAAHCRDYFERNLEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLAC

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=1150273 HUW69_RS07795 WP_001183696.1 1746709..1748133(+) (sbcB) [Vibrio cholerae strain 4295STDY6534200]
ATGCAGCAAGAACACCAGCCCACATTCTTCTTCTTTGACTACGAGACTTGGGGGGTCAATCCAGCCAAAGATCGTCCTAG
TCAGTTTGCGGGTGTGCGTACCGATATGGACTTCAACATCATCGGTGAGCCTTTGGTGATTTACTGTCAACTGCCCAACG
ACTATTTGCCCGCTCCTGAAGCCGCATTGATCACAGGGATCACCCCTCAAAAAGCCAATAGCCAAGGTCTGGCGGAGCCC
GAATTTATAGCGCGTATTCATGCAGAACTCTCCACACCCAATACCACCAGCCTAGGTTATAACAGCATACGTTTTGATGA
TGAAGTGACGCGCTACACCTGCTATCGCAACTTTGTCGACCCCTATGCTTGGAGCTGGCAACACGGCAATTCCCGTTGGG
ATCTGCTGGATGTGCTTCGCGCGTGTCATGCTTTGCGTCCTGAAGGTATCGAGTGGCCGGAAAATGATGACGGCTTCACC
AGCTTTAAACTGGAACATCTTTCTGTTGCCAACGGCATTGAGCACAGCAACGCGCACGATGCGATGGCCGATGTGATTGC
CACCATTGAACTGGCGAAAAAAGTCAAAGCCGCGCAGCCGAAATTGTTCGACTACTTCTTCACTATGCGCCACAAACGAA
AGCTGACAGAACTGATTGATATTGTGAACCAAACTCCGCTGATGCATGTTTCTGGCATGCTTGGGCGTGAGCGCCACTAC
ACCAGCTGGATTGTGCCGATTGCTTGGCATCCGACCAATCAAAATGCGGTGATTGTGGTGGATTTGGGTAAAGACCCTCA
GCCGCTAATGGATCTCGATGCCGAAACGCTGCAAGCACGTCTCTATACGCGGTATGAAGACCTAGCGCCGGATGAGCTAC
CAGTACCCGTGAAATTGGTGCATCTCAATAAATGCCCCATTCTCGCTCCGGCCAAAACCTTGACCGCAGAAAATGCACAA
AAGATTGGTATTGACCGCGAACAGTGTCTCGCGCACTTGAATGTGATTCGTCAACACCCCGAGATTCGTGAAAAGCTGGT
GACGGTATTTAGCCAAGAGCGCGAGTTTAACCAAGAGAGTGATGTGGATAGCCAACTCTATGCCGGCTTTTTCTCCCCAG
CCGATCGCGCGGCGATGGAGATCATCCGCACCACTGCACCGGAGAATCTGGGCAGCTTAGCGATACAGGTGGCAGATAAG
CGCATTGAACCACTGCTGTTTCGTTATCGTGCGCGCCATTATCCCCATACCTTAACCGATACCGAGCAACGCCGCTGGGC
AGCGCATTGCCGTGACTATTTCGAGCGCAATCTAGAAGGTTATATGTTGAATTTGGAAAATCTGGTGCATGAACATCAAG
CTGATCCAAAGAAAATGGCGATTTTAAAATCCGTCTACCATTACGTGGAAAAACTCGCTTGCTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-191)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

98.734

100

0.987

Multiple sequence alignment