Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoS   Type   Regulator
Locus tag   HUW69_RS04100 Genome accession   NZ_LT992490
Coordinates   883433..886777 (+) Length   1114 a.a.
NCBI ID   WP_174566455.1    Uniprot ID   -
Organism   Vibrio cholerae strain 4295STDY6534200     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 878433..891777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUW69_RS04075 (SAMEA4374365_00829) sucC 878572..879738 (+) 1167 WP_001048578.1 ADP-forming succinate--CoA ligase subunit beta -
  HUW69_RS04080 (SAMEA4374365_00830) sucD 879738..880610 (+) 873 WP_000025475.1 succinate--CoA ligase subunit alpha -
  HUW69_RS04085 (SAMEA4374365_00831) znuB 880699..881481 (-) 783 WP_000571529.1 zinc ABC transporter permease subunit ZnuB -
  HUW69_RS04090 (SAMEA4374365_00832) znuC 881474..882262 (-) 789 WP_000996142.1 zinc ABC transporter ATP-binding protein ZnuC -
  HUW69_RS04095 (SAMEA4374365_00833) znuA 882346..883230 (+) 885 WP_000952839.1 zinc ABC transporter substrate-binding protein ZnuA -
  HUW69_RS04100 (SAMEA4374365_00834) tfoS 883433..886777 (+) 3345 WP_174566455.1 AraC family transcriptional regulator Regulator
  HUW69_RS04105 (SAMEA4374365_00836) - 887552..887782 (+) 231 WP_000777869.1 FeoA family protein -
  HUW69_RS04110 (SAMEA4374365_00837) feoB 887779..890055 (+) 2277 WP_174566456.1 Fe(2+) transporter permease subunit FeoB -
  HUW69_RS04115 (SAMEA4374365_00838) - 890052..890282 (+) 231 WP_000602537.1 FeoC-like transcriptional regulator -
  HUW69_RS04120 (SAMEA4374365_00839) - 890541..890969 (-) 429 WP_170921614.1 HIT family protein -

Sequence

Protein


Download         Length: 1114 a.a.        Molecular weight: 126362.94 Da        Isoelectric Point: 6.8702

>NTDB_id=1150266 HUW69_RS04100 WP_174566455.1 883433..886777(+) (tfoS) [Vibrio cholerae strain 4295STDY6534200]
MFRIFLYGCLLNILIPSLVLALDKSVSIFYPLPIQEQGKVIVAHNLYLGSDGGIWVHDVHGKVMYFDGQNVLPRRGSVLP
QLSTHIVYANSAFWAFEQHELFRTYPGGERELMLSLTPGTQIIQMGASNGMIWMVDGGNFYSYEIRSGRVESLSLHELYQ
LNSASKVVINDAQFLVSKWALATNVGVYLSDEQGFSHVKKSGKNFIQKLYFSHKRRELLVGSKRGALVIDIEDKRPPLDR
IGSSHVLSIAETEKEYWIGTEDGLFVYSFITGKIVQLESNHQDGYALLGKKIYAMVNDFQGGMWIGTDKGIFYYSLFGQQ
VTRYPGQALSNDGSKTPIGKMVPLNSDGDYLAITAQGLYNFNFSGELRKHLIYPGKVNDFVIDQEHIWIATEKGLVRYNL
SRRSIDTPNLPLPLLQTAIQHLSLDNDGNLWGTSDYQIWSYSLSEKNYRDYGSEWMVKAFSPSQITLLAAVRDGIVIGTE
HGAYSLFEKQIRFDFASHRYGEIVQVVEDTAGHIWVVGSYGVFQWRKNQPESVTVELIEENIQPLCIAESKQGMWLISTK
GISYYRNQELTKHFGAPYGLISNEFLPASCAVGEEQDTSSLIIGSQFGVVKTNTEELAVSNLPNIQVTFSQVSVNHTTKL
LGYRMSEPVKIAYGDSISFQFGALPSSRSQSLEYKLNDEQQWQRFDGALLNFDQLLPGKYRLKVRSANPMQRYRTEALFD
FEVSEPWYMTSMALVGYVLSLLGLLALALWWRTRMILAANRKLKAQVELKTSQLRHQSKIVLSNNHQLRKQLQLHHTILG
SVLNNIDASLRHLSSYAKVRSWSEFEAPFNKVKQELAQLHFMHRGDEDESKYHDLHLLIESALKSWHEEYSKALIKLTYS
GEPRFVEVRQFNLDVLFNAVLTDAIKRLYKHQELTIQLEVRNAQAVIVFSDFGAPIQNINKTMVTLSGSSYPLEELVTRS
GGELHVLALKERNVIELAWPLATLPELEAVHKQEESELGAKVSIDEVEKEWLSKVEKLIELHYSDPNFTTSTAAQALYVS
ERSLQRRFKAATGKTFKESLNEVRLEKACQSLLSGAKIAQVAFDCGFNDPSYFSQRFKHHFGLSPSQFIEDQEN

Nucleotide


Download         Length: 3345 bp        

>NTDB_id=1150266 HUW69_RS04100 WP_174566455.1 883433..886777(+) (tfoS) [Vibrio cholerae strain 4295STDY6534200]
GTGTTTCGCATATTTTTGTATGGCTGCTTGCTCAATATCCTGATCCCATCTTTGGTATTGGCATTAGATAAATCTGTATC
TATTTTCTATCCCCTGCCGATTCAAGAGCAGGGGAAGGTGATCGTTGCACATAACCTTTACCTTGGCAGTGATGGTGGTA
TTTGGGTGCATGATGTTCACGGTAAAGTGATGTACTTTGATGGGCAGAATGTTTTGCCTCGACGTGGCTCTGTTCTACCA
CAATTGTCCACTCATATCGTTTATGCGAACAGTGCATTTTGGGCTTTTGAGCAACACGAGTTGTTCAGAACCTATCCTGG
AGGAGAAAGAGAGCTGATGTTGAGCTTAACTCCGGGAACGCAGATTATTCAGATGGGGGCCTCTAACGGCATGATCTGGA
TGGTCGATGGGGGAAACTTTTACAGTTATGAGATCCGAAGTGGTCGCGTCGAATCGCTTTCTTTACATGAACTTTATCAG
CTCAATAGTGCCAGTAAGGTCGTGATTAACGATGCACAGTTTTTAGTCTCGAAATGGGCTTTAGCGACCAATGTCGGGGT
GTATTTATCTGACGAACAAGGTTTTTCTCATGTAAAAAAATCAGGTAAAAACTTTATCCAAAAACTCTATTTTTCCCATA
AACGTCGAGAGCTGTTAGTTGGGTCTAAACGTGGTGCTTTAGTCATTGATATTGAAGATAAACGCCCACCACTGGATAGA
ATTGGTTCCTCTCATGTTCTCTCTATTGCGGAAACCGAGAAAGAGTACTGGATCGGTACAGAAGATGGGCTCTTTGTTTA
CTCTTTTATCACCGGGAAAATCGTGCAACTGGAAAGTAACCATCAAGATGGCTATGCCTTACTGGGCAAGAAAATCTACG
CCATGGTGAATGACTTTCAAGGTGGGATGTGGATAGGAACTGACAAGGGGATTTTTTATTACTCCCTGTTTGGTCAGCAG
GTTACTCGGTATCCAGGACAAGCGTTATCTAATGACGGTAGTAAAACGCCGATCGGTAAAATGGTACCACTCAACTCCGA
CGGAGATTATTTGGCGATAACTGCACAAGGTCTGTATAACTTCAATTTTTCGGGTGAGTTACGTAAACATCTCATTTATC
CCGGTAAAGTGAATGATTTTGTGATTGACCAAGAGCATATTTGGATCGCGACAGAGAAAGGTTTGGTTCGTTACAATCTC
AGTCGTCGTAGTATTGATACGCCGAATTTACCGCTCCCTTTGCTACAAACGGCTATTCAACATCTTAGCTTAGATAATGA
TGGTAACTTATGGGGGACAAGTGATTACCAAATATGGTCATACTCACTCTCTGAAAAAAACTATCGAGATTATGGTTCTG
AATGGATGGTGAAAGCTTTTTCTCCATCACAGATTACTCTGCTTGCCGCAGTACGAGACGGCATAGTGATCGGGACGGAA
CATGGCGCGTATTCCCTGTTTGAAAAACAGATCCGCTTTGATTTTGCCAGCCATCGTTATGGTGAGATAGTACAAGTTGT
TGAAGATACTGCAGGCCATATTTGGGTTGTTGGCTCTTATGGGGTCTTTCAGTGGCGTAAAAATCAGCCTGAATCCGTCA
CCGTCGAGTTAATCGAAGAAAATATCCAACCTTTGTGTATTGCCGAGTCCAAGCAGGGGATGTGGCTCATCTCTACAAAA
GGGATCAGCTATTACCGTAATCAAGAGCTCACGAAACATTTTGGGGCTCCTTATGGTTTGATCAGTAATGAATTCTTGCC
GGCATCGTGTGCGGTAGGTGAGGAGCAAGATACCTCATCGTTGATCATTGGGTCTCAGTTTGGTGTGGTGAAAACCAATA
CAGAAGAATTAGCCGTGTCTAATTTGCCTAATATTCAGGTGACGTTTAGCCAAGTCAGCGTAAATCATACGACTAAGCTT
TTGGGGTATCGTATGTCCGAGCCAGTGAAAATTGCTTATGGTGACTCGATCAGTTTTCAGTTTGGTGCTTTACCATCCTC
ACGTAGTCAGTCTTTAGAGTACAAACTTAACGATGAACAACAGTGGCAGCGTTTTGATGGGGCGCTGCTTAATTTTGATC
AACTTTTACCAGGTAAATATCGTTTGAAAGTCCGCAGTGCGAACCCAATGCAGCGATACCGAACTGAAGCCCTGTTTGAT
TTTGAAGTTTCAGAGCCTTGGTATATGACTTCCATGGCACTTGTCGGATATGTCCTTAGCCTGCTTGGTTTGTTAGCACT
CGCTTTATGGTGGCGAACACGAATGATATTGGCAGCTAACCGCAAACTTAAAGCGCAAGTGGAGCTCAAAACTAGCCAGT
TACGTCATCAAAGTAAAATTGTACTGAGCAACAACCACCAACTTCGAAAGCAACTGCAGCTCCACCATACAATTCTTGGT
AGCGTGTTAAATAATATTGATGCCTCATTGCGGCACTTATCGTCCTACGCCAAAGTACGTTCATGGAGTGAATTCGAAGC
ACCTTTCAACAAAGTGAAGCAAGAGTTGGCTCAACTGCATTTTATGCATCGCGGCGATGAAGATGAAAGCAAATATCATG
ATTTACATCTTTTGATTGAATCTGCGTTGAAGAGTTGGCACGAAGAGTACAGCAAAGCCTTGATTAAACTGACTTACAGC
GGTGAGCCTCGCTTTGTTGAAGTCCGACAATTCAATCTTGATGTGCTATTTAATGCAGTGTTAACGGATGCGATCAAACG
TTTGTATAAGCATCAAGAATTAACCATACAACTTGAAGTGAGAAATGCGCAGGCGGTTATCGTATTTTCGGATTTTGGCG
CGCCAATCCAAAACATAAACAAAACTATGGTGACTTTATCTGGAAGTAGTTATCCGCTTGAAGAGTTAGTTACTCGCAGC
GGTGGTGAATTGCATGTACTCGCATTGAAAGAGCGCAATGTTATTGAGTTAGCTTGGCCATTGGCAACCTTACCCGAGTT
AGAGGCCGTCCATAAACAAGAAGAAAGCGAACTGGGGGCTAAGGTTAGCATTGATGAAGTGGAGAAAGAGTGGCTAAGTA
AAGTCGAGAAACTGATAGAGCTGCATTATAGCGATCCCAATTTCACCACATCTACAGCAGCGCAGGCGCTTTATGTCTCT
GAACGCAGTTTACAGCGTCGCTTTAAAGCCGCGACAGGAAAAACTTTCAAAGAGTCGTTAAATGAAGTTCGCTTAGAAAA
AGCGTGTCAAAGCTTATTGAGTGGGGCGAAAATCGCGCAAGTTGCCTTTGATTGCGGATTTAATGATCCCTCTTATTTCA
GTCAGCGTTTCAAACATCATTTTGGATTATCACCAAGCCAATTCATCGAAGATCAAGAAAACTAA

Domains

Predicted by InterproScan.

Helix-turn-helix domain (HTH_18)

(1034-1109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoS Vibrio cholerae O1 biovar El Tor strain E7946

95.153

100

0.952

Multiple sequence alignment