Detailed information NTG1150158

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: DG247_RS01140
• Genome accession: NZ_LT992486
• Coordinates: 231606..232613 (+)
• Length: 335 a.a.
• NCBI ID: WP_000224452.1
• Uniprot ID: A0A085RG68
• Organism: Vibrio cholerae strain 4295STDY6534216
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 226606..237613

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DG247_RS01120 (SAMEA4374366_00214)	metJ	226610..226927 (+)	318	WP_000796267.1	met regulon transcriptional regulator MetJ	-
DG247_RS01125 (SAMEA4374366_00215)	-	227038..228315 (-)	1278	WP_001278588.1	malic enzyme-like NAD(P)-binding protein	-
DG247_RS01130 (SAMEA4374366_00216)	rpmE	228623..228841 (-)	219	WP_000643446.1	50S ribosomal protein L31	-
DG247_RS01135 (SAMEA4374366_00217)	priA	229096..231300 (+)	2205	WP_001247858.1	primosomal protein N'	-
DG247_RS01140 (SAMEA4374366_00218)	cytR	231606..232613 (+)	1008	WP_000224452.1	DNA-binding transcriptional regulator CytR	Regulator
DG247_RS01145 (SAMEA4374366_00219)	-	232785..233336 (+)	552	WP_001884022.1	SPOR domain-containing protein	-
DG247_RS01150 (SAMEA4374366_00220)	hslV	233473..234030 (+)	558	WP_000208249.1	ATP-dependent protease subunit HslV	-
DG247_RS01155 (SAMEA4374366_00221)	hslU	234096..235427 (+)	1332	WP_001293370.1	HslU--HslV peptidase ATPase subunit	-
DG247_RS01160 (SAMEA4374366_00222)	-	235531..236448 (+)	918	WP_001066162.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
DG247_RS01165 (SAMEA4374366_00223)	rraA	236523..237038 (+)	516	WP_000456236.1	ribonuclease E activity regulator RraA	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37018.59 Da
• Isoelectric Point: 7.0759

>NTDB_id=1150158 DG247_RS01140 WP_000224452.1 231606..232613(+) (cytR) [Vibrio cholerae strain 4295STDY6534216]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLVVRESAAPPSKK

Nucleotide

• Length: 1008 bp

>NTDB_id=1150158 DG247_RS01140 WP_000224452.1 231606..232613(+) (cytR) [Vibrio cholerae strain 4295STDY6534216]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGAGTTTCAACCGCGACCGTGTCTCGTGCGTTGATGAATCCAGAGAA
AGTCTCGTCGTCCACTCGTAAACGAGTGGAAGAGGCCGTGCTGGAAGCGGGTTACTCACCCAATTCTTTGGCGCGCAATT
TGCGCCGTAATGAATCGAAAACCATCGTTGCTATCGTGCCAGATATCTGTGATCCCTACTTTTCTGAGATCATTCGCGGT
ATTGAAGATGCCGCGATGGAGCACGGTTATCTGGTGCTGTTGGGGGATAGTGGTCAACAGAAGCGTCGGGAGAACTCGTT
CGTTAATCTGGTGTTTACCAAACAGGCAGACGGTATGTTGCTGCTGGGGACAGATTTGCCGTTTGATGTGAGTAAACCTG
AGCAGAAAAACCTACCGCCTATGGTGATGGCGTGTGAATTTGCGCCAGAGCTGGAATTGCCAACGGTACACATTGATAAC
CTGACCTCGGCATTTGAGGCGGTAAACTATCTCACTCAGCTTGGGCACAAACGGATTGCGCAGATCTCAGGTCCACAACA
TGCTGCGCTGTGCCAATTCCGTCATCAAGGCTATCAACAGGCGTTGCGTCGTGCTGGCATCACCATGAACCCGACTTACT
GCACTTTTGGCGATTTCACTTTTGAAGCCGGGGCAAAAGCGGTGCGTCAGCTGTTGGCATTGCCTGAGCAGCCGACCGCG
ATTTTCTGTCATAACGATACGATGGCGATTGGCGCAATTCAGGAAGCGAAGCGACTTGGCTTGCGCGTACCGCAAGATCT
CTCTGTGGTCGGTTTTGACGATATTCAGTTTGCCCAGTACTGCGATCCCCCATTAACCACCATTTCGCAGCCGCGTTATG
AGATTGGCCGTCAAGCCATGCTGATGATGCTTGAGCTGCTTCGCGGACACGATGTACGTGCTGGATCGCGTCTTTTGGAG
ACCAAGCTGGTCGTGCGTGAGAGTGCTGCGCCGCCAAGCAAGAAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A085RG68

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	100	100	1
cytR	Vibrio parahaemolyticus RIMD 2210633	90.719	99.701	0.904