Detailed information NTG1150115

Bioinformatically predicted

Overview

• Name: comGD
• Type: Machinery gene
• Locus tag: DXE38_RS00385
• Genome accession: NZ_LT992477
• Coordinates: 65590..66036 (+)
• Length: 148 a.a.
• NCBI ID: WP_001796473.1
• Uniprot ID: -
• Organism: Staphylococcus aureus isolate 22_LA_562
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	66928..68100	65590..66036	flank	892

Gene organization within MGE regions

Location: 65590..68100

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DXE38_RS00385	comGD	65590..66036 (+)	447	WP_001796473.1	competence type IV pilus minor pilin ComGD	Machinery gene
DXE38_RS00390	comGE	66023..66322 (+)	300	WP_000844413.1	hypothetical protein	Machinery gene
DXE38_RS00395	comGF	66240..66737 (+)	498	WP_001825340.1	competence type IV pilus minor pilin ComGF	Machinery gene
DXE38_RS00400	-	66928..68100 (+)	1173	WP_000195429.1	IS256-like element IS256 family transposase	-

Sequence

Protein

• Length: 148 a.a.
• Molecular weight: 17131.31 Da
• Isoelectric Point: 10.3312

>NTDB_id=1150115 DXE38_RS00385 WP_001796473.1 65590..66036(+) (comGD) [Staphylococcus aureus isolate 22_LA_562]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide

• Length: 447 bp

>NTDB_id=1150115 DXE38_RS00385 WP_001796473.1 65590..66036(+) (comGD) [Staphylococcus aureus isolate 22_LA_562]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAAATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACAATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (8-31)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGD	Staphylococcus aureus MW2	99.324	100	0.993
comGD	Staphylococcus aureus N315	99.324	100	0.993