Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   DXE30_RS07635 Genome accession   NZ_LT992466
Coordinates   1471359..1471805 (+) Length   148 a.a.
NCBI ID   WP_001796473.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 4_LA_208     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1466359..1476805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE30_RS07600 - 1466853..1467056 (+) 204 WP_000087559.1 YqgQ family protein -
  DXE30_RS07605 - 1467053..1468039 (+) 987 WP_000161315.1 ROK family glucokinase -
  DXE30_RS07610 - 1468039..1468368 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  DXE30_RS07615 - 1468365..1468988 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  DXE30_RS07620 comGA 1469040..1470014 (+) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  DXE30_RS07625 comGB 1469986..1471056 (+) 1071 WP_000776425.1 competence type IV pilus assembly protein ComGB Machinery gene
  DXE30_RS07630 comGC 1471070..1471381 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  DXE30_RS07635 comGD 1471359..1471805 (+) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  DXE30_RS07640 comGE 1471792..1472091 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  DXE30_RS07645 comGF 1472009..1472506 (+) 498 WP_001825340.1 competence type IV pilus minor pilin ComGF Machinery gene
  DXE30_RS07650 - 1472603..1472749 (+) 147 WP_001789879.1 hypothetical protein -
  DXE30_RS07655 - 1472739..1473263 (+) 525 WP_001015120.1 shikimate kinase -
  DXE30_RS07660 gcvT 1473422..1474513 (+) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  DXE30_RS07665 gcvPA 1474533..1475879 (+) 1347 WP_000019698.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17131.31 Da        Isoelectric Point: 10.3312

>NTDB_id=1149645 DXE30_RS07635 WP_001796473.1 1471359..1471805(+) (comGD) [Staphylococcus aureus isolate 4_LA_208]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=1149645 DXE30_RS07635 WP_001796473.1 1471359..1471805(+) (comGD) [Staphylococcus aureus isolate 4_LA_208]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAAATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACAATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993

Multiple sequence alignment