Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   W903_RS05260 Genome accession   NZ_CP006910
Coordinates   1009095..1010057 (-) Length   320 a.a.
NCBI ID   WP_000735583.1    Uniprot ID   -
Organism   Streptococcus agalactiae CNCTC 10/84     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1004095..1015057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  W903_RS05240 (W903_1078) dprA 1005295..1006137 (-) 843 WP_001015249.1 DNA-processing protein DprA Machinery gene
  W903_RS05245 (W903_1079) - 1006276..1007304 (-) 1029 WP_000162771.1 siderophore ABC transporter substrate-binding protein -
  W903_RS05250 (W903_1080) - 1007366..1008127 (-) 762 WP_000614750.1 ABC transporter ATP-binding protein -
  W903_RS05255 (W903_1081) - 1008124..1009098 (-) 975 WP_000588581.1 iron chelate uptake ABC transporter family permease subunit -
  W903_RS05260 (W903_1082) ceuB 1009095..1010057 (-) 963 WP_000735583.1 ABC transporter permease Machinery gene
  W903_RS05265 (W903_1083) - 1010297..1010845 (-) 549 WP_000136503.1 sugar O-acetyltransferase -
  W903_RS05270 (W903_1084) - 1010866..1011627 (-) 762 WP_000201090.1 ribonuclease HII -
  W903_RS05275 (W903_1085) ylqF 1011614..1012465 (-) 852 WP_000201278.1 ribosome biogenesis GTPase YlqF -
  W903_RS05280 (W903_1086) - 1012555..1013942 (-) 1388 Protein_971 site-specific integrase -
  W903_RS10910 - 1014034..1014252 (-) 219 WP_000696051.1 hypothetical protein -
  W903_RS05290 (W903_1089) - 1014521..1014742 (-) 222 WP_000286238.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 320 a.a.        Molecular weight: 34864.98 Da        Isoelectric Point: 8.4842

>NTDB_id=114956 W903_RS05260 WP_000735583.1 1009095..1010057(-) (ceuB) [Streptococcus agalactiae CNCTC 10/84]
MKKLLTTPVMGCTLVILSLTSLFVGVKSIPLEQITHLDQSQVDIFLASRLPRTISILISGASLSVCGLLMQQLTQNKFVS
PTTSGTMDWAKLGVVVTLIFFKNTSIFIQLCIASGFAILGSLLFVTILKMITFKDNIFIPLIGLMLGQIVAAATVFLGTH
FQVLQSVNSWLQGNFSIMTSHRYEILYLALPCLFLVYFFAHQFTIVGLGESFAKNLGIAYEKMIYFGLVLVSIMTSLVII
IVGALPFLGLIVPNLISLTKGDHMSSTILETSLLGACIVMICDLFGRLVIFPYEVSIGVTLGVLGSAFFLISIIRNEGKS

Nucleotide


Download         Length: 963 bp        

>NTDB_id=114956 W903_RS05260 WP_000735583.1 1009095..1010057(-) (ceuB) [Streptococcus agalactiae CNCTC 10/84]
ATGAAAAAGCTATTAACCACTCCTGTAATGGGTTGTACTTTGGTTATACTTTCTCTAACGTCCCTATTTGTTGGTGTTAA
ATCTATCCCACTGGAGCAAATAACACACCTTGATCAATCACAGGTAGATATTTTTTTAGCGAGTCGCTTACCAAGAACCA
TTAGTATCCTAATATCTGGTGCAAGTTTGTCAGTCTGTGGCCTGCTGATGCAACAACTCACCCAAAACAAGTTCGTTTCA
CCGACAACTTCAGGGACTATGGATTGGGCGAAATTAGGAGTAGTTGTTACGCTGATTTTCTTTAAAAATACCTCTATTTT
TATTCAACTATGTATAGCTTCAGGTTTTGCCATTTTAGGATCGCTTCTTTTTGTAACCATTTTAAAAATGATTACTTTTA
AGGATAATATTTTTATACCTCTTATCGGACTGATGCTTGGACAAATTGTAGCAGCAGCAACAGTATTTTTAGGAACACAT
TTTCAAGTACTACAATCTGTCAACAGTTGGCTTCAAGGTAATTTTTCCATCATGACTAGCCATCGCTACGAAATTCTTTA
CTTAGCATTGCCATGTTTGTTTTTAGTGTATTTTTTTGCTCATCAGTTTACCATTGTTGGGCTTGGAGAAAGCTTCGCTA
AAAATTTAGGGATTGCTTATGAAAAGATGATTTACTTTGGTTTAGTTTTGGTTTCAATTATGACATCCCTAGTCATTATT
ATCGTAGGAGCTTTACCTTTCTTAGGTTTAATCGTACCTAATCTAATTAGCTTAACTAAAGGGGATCATATGTCCTCAAC
TATCTTAGAGACATCGCTTTTAGGGGCTTGTATCGTCATGATATGTGATCTTTTTGGTCGCTTAGTTATTTTTCCTTATG
AAGTCTCAATAGGAGTTACGCTAGGAGTATTGGGTAGTGCCTTTTTCTTGATTTCAATTATAAGAAATGAGGGAAAATCA
TGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(14-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

48.276

99.688

0.481

Multiple sequence alignment