Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   DXE39_RS11485 Genome accession   NZ_LT992460
Coordinates   2170882..2171328 (+) Length   148 a.a.
NCBI ID   WP_001796473.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 9_LA_281     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2165882..2176328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE39_RS11450 - 2166376..2166579 (+) 204 WP_000087559.1 YqgQ family protein -
  DXE39_RS11455 - 2166576..2167562 (+) 987 WP_000161315.1 ROK family glucokinase -
  DXE39_RS11460 - 2167562..2167891 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  DXE39_RS11465 - 2167888..2168511 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  DXE39_RS11470 comGA 2168563..2169537 (+) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  DXE39_RS11475 comGB 2169509..2170579 (+) 1071 WP_000776425.1 competence type IV pilus assembly protein ComGB Machinery gene
  DXE39_RS11480 comGC 2170593..2170904 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  DXE39_RS11485 comGD 2170882..2171328 (+) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  DXE39_RS11490 comGE 2171315..2171614 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  DXE39_RS11495 comGF 2171532..2172029 (+) 498 WP_001825340.1 competence type IV pilus minor pilin ComGF Machinery gene
  DXE39_RS11500 - 2172126..2172272 (+) 147 WP_001789879.1 hypothetical protein -
  DXE39_RS11505 - 2172262..2172786 (+) 525 WP_001015120.1 shikimate kinase -
  DXE39_RS11510 gcvT 2172945..2174036 (+) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  DXE39_RS11515 gcvPA 2174056..2175402 (+) 1347 WP_031795510.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17131.31 Da        Isoelectric Point: 10.3312

>NTDB_id=1149385 DXE39_RS11485 WP_001796473.1 2170882..2171328(+) (comGD) [Staphylococcus aureus isolate 9_LA_281]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=1149385 DXE39_RS11485 WP_001796473.1 2170882..2171328(+) (comGD) [Staphylococcus aureus isolate 9_LA_281]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAAATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACAATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993

Multiple sequence alignment