Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   DBR02_RS18490 Genome accession   NZ_LT991957
Coordinates   3768899..3769525 (+) Length   208 a.a.
NCBI ID   WP_063449134.1    Uniprot ID   -
Organism   Enterobacter cloacae complex sp. isolate C45     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3763899..3774525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBR02_RS18470 - 3764299..3766059 (-) 1761 WP_107535071.1 Lon protease family protein -
  DBR02_RS18475 matP 3766245..3766697 (+) 453 WP_006809347.1 macrodomain Ter protein MatP -
  DBR02_RS18480 ompA 3766763..3767815 (-) 1053 WP_017694761.1 porin OmpA -
  DBR02_RS18485 sulA 3768172..3768681 (-) 510 WP_063449135.1 SOS-induced cell division inhibitor SulA -
  DBR02_RS18490 sxy/tfoX 3768899..3769525 (+) 627 WP_063449134.1 TfoX/Sxy family DNA transformation protein Regulator
  DBR02_RS18495 yccS 3769482..3771644 (-) 2163 WP_107535072.1 YccS family putative transporter -
  DBR02_RS18500 - 3771663..3772109 (-) 447 WP_107535073.1 YccF domain-containing protein -
  DBR02_RS18505 helD 3772232..3774286 (+) 2055 WP_107535074.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24030.58 Da        Isoelectric Point: 9.4684

>NTDB_id=1149142 DBR02_RS18490 WP_063449134.1 3768899..3769525(+) (sxy/tfoX) [Enterobacter cloacae complex sp. isolate C45]
MKKISYERIYQSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEQSAKYCVKNASSFLTLMKRGRPVLLN
YYRVDEGLWQNREKLLQLSSFALDAARKERYQRHQRNRLKDLPNLTFQIEVLLMEAGITNEETLRQLGAKTSWLKMRSRN
KALSIRVLFALEGAIEGLHEAALPADIRRELTEWFNALPESQGHHSAR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=1149142 DBR02_RS18490 WP_063449134.1 3768899..3769525(+) (sxy/tfoX) [Enterobacter cloacae complex sp. isolate C45]
ATGAAAAAGATATCCTATGAGCGGATTTATCAATCGCAGGAATACCTCTCTCCGCTGGGTGAAATTCACCATCGAGCCCT
GTTTGGCGGTTATACCCTGGCCGTGGATGAAGCTGTGTTTGCAATGGTGTCTGACGGTGAGCTTTATCTTCGCGCCTGTG
AGCAGAGTGCAAAATACTGTGTAAAAAATGCCTCCTCTTTTCTGACGCTGATGAAACGAGGACGTCCTGTTCTGCTTAAT
TACTATCGTGTGGATGAGGGGCTTTGGCAAAACAGGGAAAAGTTGCTTCAGCTCTCCTCGTTTGCGCTCGATGCTGCCAG
GAAAGAGCGCTACCAGCGCCATCAGCGTAACCGGCTAAAAGACCTGCCAAACCTGACTTTTCAGATTGAGGTCCTGCTGA
TGGAAGCGGGTATCACCAATGAAGAGACGCTACGACAGCTGGGTGCGAAGACGAGCTGGCTGAAAATGCGCTCCAGAAAT
AAGGCGCTGAGCATCCGGGTTTTGTTCGCGCTTGAAGGCGCCATCGAAGGGCTTCACGAAGCGGCACTCCCGGCGGATAT
TCGCCGGGAGCTTACGGAGTGGTTTAATGCGCTGCCTGAGTCGCAGGGGCATCATTCCGCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.911

97.115

0.572

Multiple sequence alignment