Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   DBR08_RS12060 Genome accession   NZ_LT991954
Coordinates   2493711..2494337 (+) Length   208 a.a.
NCBI ID   WP_017384804.1    Uniprot ID   A0AA37AJW2
Organism   Enterobacter hormaechei subsp. steigerwaltii isolate C309     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2488711..2499337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBR08_RS12040 - 2489110..2490870 (-) 1761 WP_017384808.1 AAA family ATPase -
  DBR08_RS12045 matP 2491057..2491509 (+) 453 WP_006809347.1 macrodomain Ter protein MatP -
  DBR08_RS12050 ompA 2491575..2492627 (-) 1053 WP_017694761.1 porin OmpA -
  DBR08_RS12055 sulA 2492984..2493493 (-) 510 WP_026080726.1 SOS-induced cell division inhibitor SulA -
  DBR08_RS12060 sxy/tfoX 2493711..2494337 (+) 627 WP_017384804.1 TfoX/Sxy family DNA transformation protein Regulator
  DBR08_RS12065 yccS 2494294..2496456 (-) 2163 WP_017384803.1 YccS family putative transporter -
  DBR08_RS12070 - 2496475..2496921 (-) 447 WP_003858149.1 YccF domain-containing protein -
  DBR08_RS12075 helD 2497044..2499098 (+) 2055 WP_045341501.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24018.63 Da        Isoelectric Point: 9.4592

>NTDB_id=1149112 DBR08_RS12060 WP_017384804.1 2493711..2494337(+) (sxy/tfoX) [Enterobacter hormaechei subsp. steigerwaltii isolate C309]
MKKISYDRIYQSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEQSAKYCVKNASSFLTLMKRGRPVLLN
YYRVDEGLWQNREKLLQLSSFALDAARKERYQRHQRNRLKDLPNLTFQIEVLLMEAGITNEETLRQLGAKTSWLKMRSKN
KALSIRVLFALEGAIEGLHEAALPADIRRELMEWFNALPESQGHHSAR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=1149112 DBR08_RS12060 WP_017384804.1 2493711..2494337(+) (sxy/tfoX) [Enterobacter hormaechei subsp. steigerwaltii isolate C309]
ATGAAAAAGATATCTTATGATCGGATTTATCAATCTCAGGAATACCTCTCTCCGCTGGGCGAAATTCATCATCGCGCCCT
GTTTGGCGGTTATACCCTGGCCGTGGATGAAGCGGTGTTCGCGATGGTGTCTGACGGCGAGCTGTACCTTCGCGCCTGTG
AGCAAAGTGCAAAATACTGTGTAAAAAACGCCTCCTCTTTTCTAACCCTGATGAAACGAGGACGGCCAGTGCTGCTTAAT
TACTACCGTGTGGATGAAGGTCTGTGGCAAAACAGGGAAAAGCTGCTTCAGCTCTCCTCGTTTGCGCTCGATGCCGCCAG
GAAAGAGCGCTACCAGCGCCATCAGCGTAACCGGCTTAAGGATCTGCCGAACCTGACCTTTCAGATTGAGGTCCTGCTTA
TGGAGGCGGGCATTACCAATGAAGAGACGCTACGACAGTTGGGGGCGAAGACGAGCTGGCTGAAAATGCGCTCTAAGAAT
AAAGCGCTGAGTATTCGGGTATTGTTCGCGCTTGAAGGCGCCATTGAAGGGTTACATGAAGCGGCACTCCCGGCGGATAT
TCGCCGGGAGCTTATGGAGTGGTTTAATGCGCTGCCTGAGTCGCAGGGCCATCATTCCGCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.911

97.115

0.572

Multiple sequence alignment