Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C6H34_RS22260 Genome accession   NZ_LT963395
Coordinates   4799030..4800397 (-) Length   455 a.a.
NCBI ID   WP_002555235.1    Uniprot ID   A0A108WX83
Organism   Pseudomonas cerasi isolate PL963     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4794030..4805397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6H34_RS22240 (PL963_04355) yjiA 4794982..4795959 (-) 978 WP_065350567.1 GTPase -
  C6H34_RS22245 (PL963_04356) - 4796055..4796252 (-) 198 WP_003313802.1 YbdD/YjiX family protein -
  C6H34_RS22250 (PL963_04357) - 4796280..4798355 (-) 2076 WP_003368701.1 carbon starvation CstA family protein -
  C6H34_RS22255 (PL963_04358) - 4798641..4799015 (+) 375 WP_003368702.1 PilZ domain-containing protein -
  C6H34_RS22260 (PL963_04359) radA 4799030..4800397 (-) 1368 WP_002555235.1 DNA repair protein RadA Machinery gene
  C6H34_RS22265 (PL963_04360) mscL 4800594..4801040 (+) 447 WP_003368707.1 large-conductance mechanosensitive channel protein MscL -
  C6H34_RS22270 (PL963_04361) - 4801285..4802061 (-) 777 WP_065350568.1 ferredoxin--NADP reductase -
  C6H34_RS22275 (PL963_04362) - 4802398..4802631 (+) 234 WP_003340758.1 helix-turn-helix domain-containing protein -
  C6H34_RS22280 (PL963_04363) - 4802761..4803885 (+) 1125 WP_065350569.1 methyltransferase -
  C6H34_RS22285 (PL963_04364) - 4803979..4804146 (-) 168 WP_002555239.1 DUF2474 domain-containing protein -
  C6H34_RS22290 (PL963_04365) cydB 4804168..4805175 (-) 1008 WP_003368713.1 cytochrome d ubiquinol oxidase subunit II -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48913.48 Da        Isoelectric Point: 7.1316

>NTDB_id=1148795 C6H34_RS22260 WP_002555235.1 4799030..4800397(-) (radA) [Pseudomonas cerasi isolate PL963]
MAKAKRLYGCTECGATFPKWAGQCSECGAWNTLVETMIESGAAAPPTGRTGWTGSQAQIRTLAEVSVEEIPRFSTNSTEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIAQRMPALYVTGEESQQQVAMRARRLGLPQDKLRVMTETCIETIIA
TAKVEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHMS
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPPGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=1148795 C6H34_RS22260 WP_002555235.1 4799030..4800397(-) (radA) [Pseudomonas cerasi isolate PL963]
ATGGCCAAGGCCAAACGCTTGTACGGCTGCACCGAGTGCGGCGCGACATTTCCCAAGTGGGCGGGCCAGTGCAGCGAATG
CGGTGCCTGGAACACACTGGTCGAAACCATGATTGAAAGCGGTGCCGCCGCGCCGCCTACCGGGCGTACCGGCTGGACCG
GTTCCCAGGCGCAGATCAGGACGCTGGCGGAGGTCAGTGTCGAAGAGATTCCGCGCTTCTCCACCAACTCCACCGAGCTG
GACAGGGTGCTCGGCGGCGGCCTGGTTGATGGTTCGGTGGTGCTGATCGGCGGTGACCCCGGCATCGGCAAGTCCACGAT
CCTCTTGCAGACGCTGTGCAACATTGCCCAGCGCATGCCCGCGTTGTACGTCACTGGTGAGGAATCCCAGCAGCAGGTCG
CCATGCGTGCCCGTCGTCTGGGACTGCCGCAGGACAAGCTGCGGGTCATGACCGAAACCTGCATCGAGACCATCATTGCC
ACCGCCAAGGTCGAGAAGCCCAAGGTGATGGTGATCGATTCGATCCAGACGATTTTCACCGAACAGTTGCAGTCGGCCCC
CGGCGGCGTGTCGCAGGTTCGCGAAAGCGCTGCCTTGCTGGTGCGTTACGCCAAGCAGAGCGGCACGGCGATCTTCCTGG
TCGGTCACGTCACCAAGGAAGGCGCCTTGGCCGGTCCGCGCGTGCTTGAGCACATGGTCGACACCGTGTTGTATTTCGAG
GGCGAGTCGGACGGGCGCCTGCGCCTGCTGCGGGCGGTGAAGAACCGCTTTGGCGCGGTCAACGAGCTGGGCGTGTTCGG
CATGACCGACAAGGGCCTGAAAGAAGTCTCCAATCCGTCTGCGATCTTTCTTACCCGTGCGCAGGAAGAAGTACCGGGCA
GTGTGGTCATGGCGACCTGGGAAGGCACGCGGCCGATGCTGGTGGAGGTGCAGGCGCTGGTGGACGACAGTCATATGTCC
AACCCGCGCCGCGTGACGCTGGGTCTGGATCAGAATCGTCTGGCCATGCTGCTGGCTGTTCTGCACCGCCACGGCGGCAT
TCCCACTCACGACCAGGACGTGTTTCTCAACGTGGTAGGTGGGGTGAAGGTGCTGGAAACCGCATCCGACCTGGCCTTGA
TGGCAGCCGTAATGTCCAGCCTGCGCAATCGTCCGCTGCCGCATGATTTGCTGGTGTTCGGTGAGGTGGGGCTGTCGGGT
GAAGTCAGGCCGGTGCCCAGTGGGCAGGAGCGCCTCAAGGAGGCCGCCAAGCACGGCTTCAAACGCGCCATCGTGCCCAA
GGGCAACGCGCCAAAGGAGGCGCCACCTGGTTTGCAGATCATTGCCGTTACGCGACTGGAACAGGCCCTGGATGCGCTGT
TCGAGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(73-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A108WX83

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.123

100

0.492
  radA Streptococcus pneumoniae Rx1

46.739

100

0.473
  radA Streptococcus pneumoniae R6

46.739

100

0.473
  radA Streptococcus pneumoniae TIGR4

46.739

100

0.473
  radA Streptococcus pneumoniae D39

46.739

100

0.473
  radA Streptococcus mitis SK321

46.93

100

0.47
  radA Streptococcus mitis NCTC 12261

46.711

100

0.468

Multiple sequence alignment