Detailed information
Bioinformatically predicted
Overview
| Name | comGE | Type | Machinery gene |
| Locus tag | LSAJ54_RS06755 | Genome accession | NZ_LT960790 |
| Coordinates | 1342069..1342374 (-) | Length | 101 a.a. |
| NCBI ID | WP_011374997.1 | Uniprot ID | Q38W27 |
| Organism | Latilactobacillus sakei strain J54 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1337069..1347374
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LSAJ54_RS10305 (LSAJ54_1361) | - | 1337254..1337382 (+) | 129 | WP_231953078.1 | TraX family protein | - |
| LSAJ54_RS06720 (LSAJ54_1362) | - | 1337508..1337873 (+) | 366 | WP_011374991.1 | DUF805 domain-containing protein | - |
| LSAJ54_RS06730 (LSAJ54_1364) | - | 1338416..1338874 (-) | 459 | WP_096584650.1 | laaL | - |
| LSAJ54_RS06735 (LSAJ54_1365) | - | 1338929..1340125 (-) | 1197 | WP_096584647.1 | acetate/propionate family kinase | - |
| LSAJ54_RS06740 (LSAJ54_1366) | - | 1340147..1341157 (-) | 1011 | WP_025016388.1 | class I SAM-dependent methyltransferase | - |
| LSAJ54_RS06745 (LSAJ54_1367) | - | 1341281..1341619 (-) | 339 | WP_056947123.1 | hypothetical protein | - |
| LSAJ54_RS06750 (LSAJ54_1368) | comGF | 1341582..1342094 (-) | 513 | WP_035145013.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| LSAJ54_RS06755 (LSAJ54_1369) | comGE | 1342069..1342374 (-) | 306 | WP_011374997.1 | hypothetical protein | Machinery gene |
| LSAJ54_RS06760 (LSAJ54_1370) | comGD | 1342361..1342813 (-) | 453 | WP_035145016.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| LSAJ54_RS06765 (LSAJ54_1371) | comGC | 1342785..1343084 (-) | 300 | WP_011374999.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| LSAJ54_RS06770 (LSAJ54_1372) | comGB | 1343081..1344088 (-) | 1008 | WP_056947133.1 | type II secretion system F family protein | Machinery gene |
| LSAJ54_RS06775 (LSAJ54_1373) | comGA | 1344081..1344971 (-) | 891 | WP_099947399.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| LSAJ54_RS06780 (LSAJ54_1374) | - | 1345087..1345818 (-) | 732 | WP_076632059.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| LSAJ54_RS06785 (LSAJ54_1375) | - | 1345909..1346409 (-) | 501 | WP_076632058.1 | VanZ family protein | - |
| LSAJ54_RS06790 (LSAJ54_1376) | - | 1346506..1346880 (+) | 375 | WP_099947400.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 101 a.a. Molecular weight: 11425.39 Da Isoelectric Point: 11.1577
>NTDB_id=1148512 LSAJ54_RS06755 WP_011374997.1 1342069..1342374(-) (comGE) [Latilactobacillus sakei strain J54]
MFRSRPAFSLVENIIALTLVLGACWLLTVSLLHFKQQQTLKQQQVAQQAVLAMAAEQLRAHQTVKKRWQMGRTIYTVTAN
QQKLKVTTKAGESVAINWTTD
MFRSRPAFSLVENIIALTLVLGACWLLTVSLLHFKQQQTLKQQQVAQQAVLAMAAEQLRAHQTVKKRWQMGRTIYTVTAN
QQKLKVTTKAGESVAINWTTD
Nucleotide
Download Length: 306 bp
>NTDB_id=1148512 LSAJ54_RS06755 WP_011374997.1 1342069..1342374(-) (comGE) [Latilactobacillus sakei strain J54]
ATGTTCAGAAGTAGGCCGGCTTTTTCACTCGTTGAAAATATCATCGCCTTAACCTTAGTATTAGGGGCTTGCTGGCTATT
AACGGTAAGTCTACTACACTTTAAGCAACAACAAACGCTTAAACAACAGCAAGTTGCACAACAGGCGGTTCTAGCAATGG
CCGCTGAGCAGTTGAGAGCGCATCAGACAGTGAAAAAACGCTGGCAAATGGGGCGAACAATCTATACGGTGACGGCTAAT
CAGCAGAAATTAAAGGTAACCACAAAGGCAGGTGAGTCGGTTGCGATTAATTGGACGACCGATTAA
ATGTTCAGAAGTAGGCCGGCTTTTTCACTCGTTGAAAATATCATCGCCTTAACCTTAGTATTAGGGGCTTGCTGGCTATT
AACGGTAAGTCTACTACACTTTAAGCAACAACAAACGCTTAAACAACAGCAAGTTGCACAACAGGCGGTTCTAGCAATGG
CCGCTGAGCAGTTGAGAGCGCATCAGACAGTGAAAAAACGCTGGCAAATGGGGCGAACAATCTATACGGTGACGGCTAAT
CAGCAGAAATTAAAGGTAACCACAAAGGCAGGTGAGTCGGTTGCGATTAATTGGACGACCGATTAA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGE | Latilactobacillus sakei subsp. sakei 23K |
100 |
100 |
1 |