Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   LSAJ54_RS05225 Genome accession   NZ_LT960790
Coordinates   1031249..1032115 (-) Length   288 a.a.
NCBI ID   WP_099947343.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain J54     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1026249..1037115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSAJ54_RS05210 (LSAJ54_1043) topA 1027485..1029569 (-) 2085 WP_016265142.1 type I DNA topoisomerase -
  LSAJ54_RS05215 (LSAJ54_1044) - 1029819..1030253 (-) 435 WP_011374692.1 Rrf2 family transcriptional regulator -
  LSAJ54_RS05220 (LSAJ54_1045) - 1030282..1031148 (-) 867 WP_099713204.1 NAD(P)H-binding protein -
  LSAJ54_RS05225 (LSAJ54_1046) dprA 1031249..1032115 (-) 867 WP_099947343.1 DNA-processing protein DprA Machinery gene
  LSAJ54_RS05230 (LSAJ54_1047) - 1032170..1032931 (-) 762 WP_099947344.1 ribonuclease HII -
  LSAJ54_RS05235 (LSAJ54_1048) ylqF 1032933..1033784 (-) 852 WP_025015771.1 ribosome biogenesis GTPase YlqF -
  LSAJ54_RS05240 (LSAJ54_1049) lepB 1033916..1034446 (-) 531 WP_099947345.1 signal peptidase I -
  LSAJ54_RS05245 (LSAJ54_1050) - 1034471..1034695 (-) 225 WP_016265150.1 YozE family protein -
  LSAJ54_RS05250 (LSAJ54_1051) - 1034706..1035335 (-) 630 WP_056947600.1 YpmS family protein -
  LSAJ54_RS05255 (LSAJ54_1052) - 1035348..1036250 (-) 903 WP_056947682.1 SGNH/GDSL hydrolase family protein -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 31875.87 Da        Isoelectric Point: 8.5888

>NTDB_id=1148503 LSAJ54_RS05225 WP_099947343.1 1031249..1032115(-) (dprA) [Latilactobacillus sakei strain J54]
MLTKNQLLLKVHLAAGFGPISELRLAAWLATSHNWALSALEIAQITRLPERYWPTFQASFQSTTLQRQCIEHEVRTTYLT
ILDKDYPQRLLETYLPPVLLFYRGDLRLLKQPCLAVVGARQATHYSKQSLEQLLQGLTATTIISGLAQGADAMAHEVALQ
RGLAPIGVIGTGINCSYPPQNEHLQQVVAEKGLLLSEYALGTPARRYQFPARNKIIAGLCHSLIVTEAWHKSGSLITANL
ALQANRNVYAIPGRIDQSLSQGCNQLIAAGATPLLDKNILIEELRYFD

Nucleotide


Download         Length: 867 bp        

>NTDB_id=1148503 LSAJ54_RS05225 WP_099947343.1 1031249..1032115(-) (dprA) [Latilactobacillus sakei strain J54]
GTGTTAACTAAAAATCAATTACTCTTAAAAGTACATTTAGCGGCGGGTTTTGGGCCTATTAGTGAATTACGCTTGGCGGC
GTGGCTAGCAACCAGTCATAATTGGGCGTTATCGGCGTTAGAAATTGCGCAGATTACGCGCTTGCCGGAACGTTATTGGC
CGACTTTTCAAGCAAGTTTTCAAAGTACAACCTTACAACGCCAATGCATCGAACATGAAGTTCGAACGACTTATTTAACC
ATCTTAGATAAAGATTACCCACAACGCTTATTGGAAACCTATTTGCCGCCCGTTTTGTTATTTTATCGTGGTGATTTAAG
ATTGTTAAAACAGCCATGTCTCGCGGTAGTCGGGGCGCGTCAAGCGACTCATTATTCTAAACAATCACTAGAACAGTTAT
TACAAGGACTAACTGCCACTACGATTATTAGTGGGTTAGCACAAGGAGCGGATGCGATGGCCCACGAAGTTGCCTTGCAG
CGTGGTTTGGCCCCAATTGGGGTGATTGGCACGGGCATTAATTGCAGTTATCCACCACAAAATGAGCATTTACAACAGGT
AGTTGCTGAAAAAGGTTTGTTATTATCTGAATACGCTCTTGGTACACCAGCCCGGCGCTATCAATTTCCAGCCCGTAATA
AAATCATCGCGGGGTTATGTCATAGTTTAATTGTGACGGAAGCATGGCACAAGAGTGGTAGCTTGATTACCGCTAACTTG
GCCCTTCAAGCTAATCGCAATGTCTATGCAATTCCGGGGCGCATTGATCAATCACTGTCACAGGGGTGCAACCAATTAAT
CGCCGCGGGAGCGACACCATTGTTAGATAAAAACATATTAATAGAAGAACTACGTTATTTTGATTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Latilactobacillus sakei subsp. sakei 23K

98.264

100

0.983

Multiple sequence alignment