Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   MFPB16_RS10275 Genome accession   NZ_LT960788
Coordinates   552278..552706 (+) Length   142 a.a.
NCBI ID   WP_154255254.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain MFPB16A1401     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 547278..557706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MFPB16_RS02645 (MFPB16_0508) - 548856..549944 (+) 1089 WP_035144637.1 glycosyltransferase family 4 protein -
  MFPB16_RS02650 (MFPB16_0509) - 549971..550636 (-) 666 WP_025016329.1 YigZ family protein -
  MFPB16_RS02655 (MFPB16_0510) comFA 550698..552035 (+) 1338 WP_052039239.1 DEAD/DEAH box helicase Machinery gene
  MFPB16_RS10275 comFC 552278..552706 (+) 429 WP_154255254.1 ComF family protein Machinery gene
  MFPB16_RS02665 (MFPB16_0512) hpf 552833..553378 (+) 546 WP_011374202.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  MFPB16_RS02670 (MFPB16_0513) secA 553627..555990 (+) 2364 WP_099960177.1 preprotein translocase subunit SecA -
  MFPB16_RS02675 (MFPB16_0514) prfB 556060..557176 (+) 1117 WP_099049013.1 peptide chain release factor 2 -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 16678.13 Da        Isoelectric Point: 10.0721

>NTDB_id=1148486 MFPB16_RS10275 WP_154255254.1 552278..552706(+) (comFC) [Latilactobacillus sakei strain MFPB16A1401]
MQLYFQRYKGQGDYQLRLLFERDIRTRFPVKSNVTYVPIPSDEQHQQERGFNPVQGLFETCFPLTSLLKKRPTEKGQAQK
NRAERLASSQFFELIPQELPHKPQSIIILDDIYTTGRTVWHAQQCLRARYPQIAINAITLAR

Nucleotide


Download         Length: 429 bp        

>NTDB_id=1148486 MFPB16_RS10275 WP_154255254.1 552278..552706(+) (comFC) [Latilactobacillus sakei strain MFPB16A1401]
ATGCAGTTATATTTTCAACGTTATAAGGGCCAAGGAGACTATCAATTACGGCTATTATTCGAACGCGACATTCGAACTCG
GTTTCCAGTAAAATCCAATGTAACTTACGTGCCTATTCCATCTGATGAGCAACATCAACAAGAACGGGGCTTTAATCCAG
TCCAAGGCTTATTCGAAACTTGTTTTCCGTTAACATCGCTATTGAAAAAGCGGCCAACAGAGAAGGGCCAAGCACAAAAA
AATCGTGCAGAACGTCTTGCAAGTTCACAATTTTTTGAATTAATACCGCAAGAATTACCGCATAAGCCACAATCGATAAT
AATCTTGGATGATATTTATACGACGGGCCGAACGGTGTGGCATGCACAACAATGTCTGCGTGCTCGGTATCCACAAATTG
CAATTAATGCGATTACTTTAGCCAGATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Latilactobacillus sakei subsp. sakei 23K

95.775

100

0.958
  comFC Lactococcus lactis subsp. cremoris KW2

38.028

100

0.38

Multiple sequence alignment