Detailed information
Bioinformatically predicted
Overview
| Name | comGB | Type | Machinery gene |
| Locus tag | MFPB16_RS06910 | Genome accession | NZ_LT960788 |
| Coordinates | 1376348..1377355 (-) | Length | 335 a.a. |
| NCBI ID | WP_099960318.1 | Uniprot ID | - |
| Organism | Latilactobacillus sakei strain MFPB16A1401 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1371348..1382355
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MFPB16_RS06870 (MFPB16_1355) | - | 1371683..1372141 (-) | 459 | WP_099960310.1 | laaL | - |
| MFPB16_RS06875 (MFPB16_1356) | - | 1372196..1373392 (-) | 1197 | WP_099960311.1 | acetate/propionate family kinase | - |
| MFPB16_RS06880 (MFPB16_1357) | - | 1373414..1374424 (-) | 1011 | WP_099960312.1 | class I SAM-dependent methyltransferase | - |
| MFPB16_RS06885 (MFPB16_1358) | - | 1374548..1374886 (-) | 339 | WP_100970230.1 | hypothetical protein | - |
| MFPB16_RS06890 (MFPB16_1359) | comGF | 1374849..1375361 (-) | 513 | WP_099960314.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| MFPB16_RS06895 (MFPB16_1360) | comGE | 1375336..1375641 (-) | 306 | WP_099960315.1 | type II secretion system protein | Machinery gene |
| MFPB16_RS06900 (MFPB16_1361) | comGD | 1375628..1376080 (-) | 453 | WP_099960316.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| MFPB16_RS06905 (MFPB16_1362) | comGC | 1376052..1376351 (-) | 300 | WP_099960317.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| MFPB16_RS06910 (MFPB16_1363) | comGB | 1376348..1377355 (-) | 1008 | WP_099960318.1 | type II secretion system F family protein | Machinery gene |
| MFPB16_RS06915 (MFPB16_1364) | comGA | 1377348..1378238 (-) | 891 | WP_099960319.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| MFPB16_RS06920 (MFPB16_1365) | - | 1378353..1379084 (-) | 732 | WP_011375002.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| MFPB16_RS06925 (MFPB16_1366) | - | 1379175..1379675 (-) | 501 | WP_099960320.1 | VanZ family protein | - |
| MFPB16_RS06930 (MFPB16_1367) | - | 1379772..1380146 (+) | 375 | WP_099960321.1 | hypothetical protein | - |
| MFPB16_RS06940 (MFPB16_1368) | - | 1380333..1381733 (-) | 1401 | WP_099960322.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 335 a.a. Molecular weight: 38449.43 Da Isoelectric Point: 9.5373
>NTDB_id=1148477 MFPB16_RS06910 WP_099960318.1 1376348..1377355(-) (comGB) [Latilactobacillus sakei strain MFPB16A1401]
MYKSRQQAQFYADFLQLLGRLLENGFSLQQAFAFLPIVFPKQRQWLNQVNQALEKGDSLAVGLAHVDFPTDYVGQIELTE
LQGNLGQCLWHLGQIQSIRQKRRREIRGVLAYPLFLLAFLGGLIGLLRHYLLPEIAQITPESNQTGSPLNRIILWGFLLV
LILLIMGSGLFMVYRRLPVLVRLQKAFKWPIIGRDIQQYYHYCLLFDLSTCLKNGLKLTEICALQKQLQQNTWLVTLVAQ
LEVILASGKSLDAYLSRSAFFPQSLRLVLAKHNLTQQTTDEITMLANLQYTELQNQLQRKLSWLQPILFILIGIIIICTY
LSILLPLYQTMEGIS
MYKSRQQAQFYADFLQLLGRLLENGFSLQQAFAFLPIVFPKQRQWLNQVNQALEKGDSLAVGLAHVDFPTDYVGQIELTE
LQGNLGQCLWHLGQIQSIRQKRRREIRGVLAYPLFLLAFLGGLIGLLRHYLLPEIAQITPESNQTGSPLNRIILWGFLLV
LILLIMGSGLFMVYRRLPVLVRLQKAFKWPIIGRDIQQYYHYCLLFDLSTCLKNGLKLTEICALQKQLQQNTWLVTLVAQ
LEVILASGKSLDAYLSRSAFFPQSLRLVLAKHNLTQQTTDEITMLANLQYTELQNQLQRKLSWLQPILFILIGIIIICTY
LSILLPLYQTMEGIS
Nucleotide
Download Length: 1008 bp
>NTDB_id=1148477 MFPB16_RS06910 WP_099960318.1 1376348..1377355(-) (comGB) [Latilactobacillus sakei strain MFPB16A1401]
ATGTATAAGTCACGACAACAAGCGCAATTTTACGCCGATTTCTTGCAGTTATTGGGGCGGCTATTAGAGAACGGCTTTTC
ATTGCAACAAGCTTTTGCCTTCTTACCGATTGTCTTTCCAAAACAACGACAGTGGTTAAATCAGGTGAATCAAGCCCTTG
AAAAAGGCGACAGTCTTGCAGTCGGTTTAGCACATGTTGATTTTCCAACTGATTATGTTGGTCAGATTGAACTAACCGAA
TTACAAGGTAATCTCGGGCAATGTTTATGGCATTTAGGTCAGATTCAAAGTATCCGCCAAAAACGCCGCCGAGAAATACG
GGGGGTGCTAGCTTATCCGTTATTTCTTTTGGCTTTTTTAGGGGGCTTAATCGGTTTATTACGCCATTATTTATTACCTG
AGATTGCCCAGATAACGCCCGAGTCAAACCAGACAGGCTCGCCGCTTAATCGCATCATATTGTGGGGCTTTTTGTTAGTG
CTAATCCTTTTGATAATGGGCAGCGGTCTTTTCATGGTTTACCGCCGGTTACCGGTTTTAGTTCGATTACAAAAAGCGTT
CAAGTGGCCAATCATTGGGCGTGATATTCAGCAGTATTATCATTATTGTTTATTATTTGATTTGAGCACTTGTCTGAAAA
ACGGGCTCAAGTTAACAGAAATTTGTGCTTTGCAGAAGCAGTTGCAACAAAATACATGGCTGGTGACCTTGGTAGCACAA
TTAGAGGTCATACTCGCTTCAGGTAAATCATTGGATGCTTATCTTAGTCGCTCTGCATTTTTTCCACAGTCGTTACGATT
GGTATTAGCTAAGCATAACCTCACGCAACAGACGACCGATGAGATTACCATGCTAGCTAACTTGCAGTATACGGAACTAC
AGAACCAATTACAGCGTAAATTGAGTTGGTTGCAACCTATTTTATTTATCTTAATTGGGATCATTATTATTTGCACGTAT
CTCAGTATTTTATTACCGCTATATCAAACAATGGAGGGAATTTCATGA
ATGTATAAGTCACGACAACAAGCGCAATTTTACGCCGATTTCTTGCAGTTATTGGGGCGGCTATTAGAGAACGGCTTTTC
ATTGCAACAAGCTTTTGCCTTCTTACCGATTGTCTTTCCAAAACAACGACAGTGGTTAAATCAGGTGAATCAAGCCCTTG
AAAAAGGCGACAGTCTTGCAGTCGGTTTAGCACATGTTGATTTTCCAACTGATTATGTTGGTCAGATTGAACTAACCGAA
TTACAAGGTAATCTCGGGCAATGTTTATGGCATTTAGGTCAGATTCAAAGTATCCGCCAAAAACGCCGCCGAGAAATACG
GGGGGTGCTAGCTTATCCGTTATTTCTTTTGGCTTTTTTAGGGGGCTTAATCGGTTTATTACGCCATTATTTATTACCTG
AGATTGCCCAGATAACGCCCGAGTCAAACCAGACAGGCTCGCCGCTTAATCGCATCATATTGTGGGGCTTTTTGTTAGTG
CTAATCCTTTTGATAATGGGCAGCGGTCTTTTCATGGTTTACCGCCGGTTACCGGTTTTAGTTCGATTACAAAAAGCGTT
CAAGTGGCCAATCATTGGGCGTGATATTCAGCAGTATTATCATTATTGTTTATTATTTGATTTGAGCACTTGTCTGAAAA
ACGGGCTCAAGTTAACAGAAATTTGTGCTTTGCAGAAGCAGTTGCAACAAAATACATGGCTGGTGACCTTGGTAGCACAA
TTAGAGGTCATACTCGCTTCAGGTAAATCATTGGATGCTTATCTTAGTCGCTCTGCATTTTTTCCACAGTCGTTACGATT
GGTATTAGCTAAGCATAACCTCACGCAACAGACGACCGATGAGATTACCATGCTAGCTAACTTGCAGTATACGGAACTAC
AGAACCAATTACAGCGTAAATTGAGTTGGTTGCAACCTATTTTATTTATCTTAATTGGGATCATTATTATTTGCACGTAT
CTCAGTATTTTATTACCGCTATATCAAACAATGGAGGGAATTTCATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGB | Latilactobacillus sakei subsp. sakei 23K |
96.418 |
100 |
0.964 |