Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   MFPB16_RS05840 Genome accession   NZ_LT960788
Coordinates   1169579..1171645 (-) Length   688 a.a.
NCBI ID   WP_231953244.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain MFPB16A1401     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1164579..1176645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MFPB16_RS05815 (MFPB16_1141) - 1164702..1165649 (-) 948 WP_025015736.1 hypothetical protein -
  MFPB16_RS05820 (MFPB16_1142) - 1165738..1167456 (-) 1719 WP_011374765.1 ribonuclease J -
  MFPB16_RS05825 (MFPB16_1143) rpsO 1167684..1167953 (-) 270 WP_011374766.1 30S ribosomal protein S15 -
  MFPB16_RS05830 (MFPB16_1144) rpsT 1168232..1168486 (+) 255 WP_011374767.1 30S ribosomal protein S20 -
  MFPB16_RS05835 (MFPB16_1145) holA 1168554..1169582 (-) 1029 WP_025015735.1 DNA polymerase III subunit delta -
  MFPB16_RS05840 (MFPB16_1146) comEC 1169579..1171645 (-) 2067 WP_231953244.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  MFPB16_RS05845 (MFPB16_1147) - 1171843..1172331 (-) 489 WP_011374770.1 ComE operon protein 2 -
  MFPB16_RS05850 (MFPB16_1148) comEA 1172389..1173096 (-) 708 WP_226474265.1 helix-hairpin-helix domain-containing protein Machinery gene
  MFPB16_RS05855 (MFPB16_1149) - 1173170..1174216 (-) 1047 WP_035145546.1 SepM family pheromone-processing serine protease -
  MFPB16_RS05860 (MFPB16_1150) coaD 1174218..1174715 (-) 498 WP_025015732.1 pantetheine-phosphate adenylyltransferase -
  MFPB16_RS05865 (MFPB16_1151) rsmD 1174728..1175282 (-) 555 WP_016265217.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  MFPB16_RS05870 (MFPB16_1152) - 1175287..1175577 (-) 291 WP_016265218.1 YlbG family protein -

Sequence

Protein


Download         Length: 688 a.a.        Molecular weight: 77625.58 Da        Isoelectric Point: 9.6852

>NTDB_id=1148467 MFPB16_RS05840 WP_231953244.1 1169579..1171645(-) (comEC) [Latilactobacillus sakei strain MFPB16A1401]
MTQPQQPVAQYFKVQPDAIQVAGDSVQLTAIGQQDGQTIKAYYRCQTFAEKRQWQQVRHPVLFYGAKDFERIQGATNQNE
FDYARFLAQQKRCFYQLTLAKETTFALRRPSSGLDWLHYWRQTCALYLRKLPTALRFHAQTLLLGLREAQVDHYQVVLGR
LGIIHLLSLSGLHVFYLVQVIRWCATYCRIPREWLNCMLFGLLPVYALLVGGTTSISRAIALILCRLLCEQLGIRQSRLD
SWSLVLLVNLFWQPYLLHSMGGILSYLMAFALIYIGEGSTFKVAYWLSLLSLPVCLRFNYRWHVLTIMMNALVTPIYLPV
VLGLVIVASVMLPVSNLVVNGCEWLLQLIYKGLGLVAQIPHAMITFGKIPLLPLLLIVTVSLLLIDGQAISNQWRKRLKR
TLASLYLASFLAIHFNPTGQVVMFDIGQGDSLLIQTPFNRHQLLIDTGGRLALPQAAWQRRAQVSRAEKVTVNYLYSQGV
DHIDAVALSHQDADHIGDLNQILKQIRVDRIICAAGLPQNRQFQRQIRPFLATVQIEPYLAGTAFKVGPQKFNVLAPTKP
GKGENSDSLVLQAQIGGASWLFTGDLEQEGERAIIERYPQLTVDYLKVGHHGSETASDPTVIKKLHLKGALISAGRENRY
GHPHQETLTTLQAAKVPYWLTAQQGMLTWSYGPGQSEKLQTTIKDSEK

Nucleotide


Download         Length: 2067 bp        

>NTDB_id=1148467 MFPB16_RS05840 WP_231953244.1 1169579..1171645(-) (comEC) [Latilactobacillus sakei strain MFPB16A1401]
ATGACACAACCACAACAACCGGTAGCACAGTATTTTAAAGTGCAACCCGATGCGATTCAAGTCGCGGGCGACAGTGTTCA
ATTAACGGCAATCGGCCAACAAGATGGTCAGACTATTAAGGCTTATTATCGCTGCCAAACGTTCGCCGAGAAGAGGCAGT
GGCAACAAGTACGACACCCCGTTTTGTTCTATGGCGCAAAAGATTTTGAACGTATACAAGGAGCTACCAATCAAAATGAG
TTTGATTATGCCCGTTTTTTAGCGCAACAGAAGCGCTGCTTTTACCAACTGACGTTAGCCAAAGAAACAACTTTTGCGCT
GAGACGTCCTAGTAGCGGTTTGGATTGGCTACATTATTGGCGCCAAACGTGTGCGCTGTATTTACGTAAGTTACCAACAG
CACTACGGTTTCATGCGCAGACGTTACTATTAGGTTTGCGGGAAGCGCAAGTTGACCATTACCAGGTTGTTTTGGGCCGC
TTAGGGATTATTCATCTATTAAGTCTATCAGGGTTGCACGTGTTTTATTTAGTGCAAGTCATTCGGTGGTGTGCGACTTA
TTGCCGTATACCGCGTGAGTGGTTAAACTGTATGTTATTTGGGCTATTGCCGGTATATGCCTTACTGGTTGGTGGTACGA
CAAGCATTAGTCGCGCGATTGCGCTTATTTTATGCCGGTTACTTTGCGAACAGTTGGGCATTCGGCAATCAAGATTAGAT
AGTTGGAGTTTAGTATTACTGGTCAATTTATTCTGGCAGCCTTATTTGCTACATAGTATGGGCGGGATTTTAAGTTATTT
GATGGCCTTTGCGCTCATTTATATTGGTGAGGGTAGCACGTTTAAAGTTGCTTACTGGCTAAGTTTATTGAGTTTGCCGG
TTTGCTTACGCTTTAATTATCGCTGGCACGTGCTGACGATAATGATGAATGCCTTAGTAACGCCTATCTATCTACCAGTT
GTGCTAGGTTTGGTGATTGTAGCGAGTGTGATGTTACCTGTTAGCAATCTAGTAGTTAACGGATGTGAGTGGCTGTTACA
GTTGATTTACAAAGGCTTAGGATTAGTCGCTCAAATCCCCCATGCGATGATTACGTTTGGTAAAATCCCCTTGTTACCAT
TACTATTGATTGTGACGGTCAGCCTCTTGTTAATCGATGGCCAGGCCATTAGCAATCAGTGGCGTAAACGGCTGAAACGC
ACATTGGCAAGTTTGTATTTGGCTAGTTTTTTGGCGATTCATTTTAATCCGACTGGCCAGGTAGTCATGTTTGATATTGG
TCAGGGTGATAGTTTGTTGATTCAAACGCCGTTTAACCGGCATCAGCTTTTAATCGATACTGGTGGCCGCCTAGCGCTAC
CGCAAGCAGCTTGGCAACGGCGGGCGCAGGTTTCACGAGCGGAAAAAGTAACGGTTAATTATCTCTATAGCCAAGGAGTA
GATCACATTGATGCGGTGGCACTTTCTCATCAGGATGCCGATCATATTGGTGATTTGAATCAGATTTTGAAACAAATTCG
TGTTGATCGAATCATTTGTGCTGCCGGGTTACCGCAAAATCGGCAATTTCAAAGACAAATTCGACCATTTTTAGCAACGG
TTCAAATTGAACCCTATTTAGCCGGGACCGCTTTTAAAGTGGGGCCGCAAAAGTTTAACGTCTTAGCGCCGACTAAGCCG
GGAAAAGGCGAAAATAGTGATTCGTTAGTCTTACAGGCACAAATTGGTGGGGCTAGCTGGCTGTTTACAGGGGATTTAGA
GCAAGAAGGCGAACGAGCGATTATCGAGCGGTATCCACAGTTAACCGTCGATTATTTAAAAGTTGGCCATCACGGTAGTG
AAACGGCTAGTGACCCCACCGTGATTAAAAAATTACACTTAAAAGGGGCATTAATCTCAGCCGGCAGAGAGAATCGTTAT
GGTCATCCGCACCAGGAAACTTTGACGACTTTGCAAGCGGCCAAAGTGCCTTATTGGCTAACGGCCCAGCAGGGGATGTT
GACCTGGTCGTATGGCCCCGGTCAAAGCGAAAAACTGCAAACAACAATAAAGGATAGTGAAAAATGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(427-635)

Competence protein (Competence)

(142-385)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Latilactobacillus sakei subsp. sakei 23K

97.238

100

0.972

Multiple sequence alignment