Detailed information
Bioinformatically predicted
Overview
| Name | comC | Type | Machinery gene |
| Locus tag | LSAF01_RS08850 | Genome accession | NZ_LT960777 |
| Coordinates | 1761865..1762554 (+) | Length | 229 a.a. |
| NCBI ID | WP_056948148.1 | Uniprot ID | A0AAX0VAL7 |
| Organism | Latilactobacillus sakei strain FLEC01 | ||
| Function | DNA uptake (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1756865..1767554
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LSAF01_RS08830 (LSAF01_1793) | - | 1757306..1757857 (+) | 552 | WP_056948150.1 | cysteine hydrolase family protein | - |
| LSAF01_RS08835 (LSAF01_1794) | fusA | 1758428..1760515 (-) | 2088 | WP_016265721.1 | elongation factor G | - |
| LSAF01_RS08840 (LSAF01_1795) | rpsG | 1760611..1761081 (-) | 471 | WP_004270185.1 | 30S ribosomal protein S7 | - |
| LSAF01_RS08845 (LSAF01_1796) | rpsL | 1761171..1761584 (-) | 414 | WP_004270179.1 | 30S ribosomal protein S12 | - |
| LSAF01_RS08850 (LSAF01_1798) | comC | 1761865..1762554 (+) | 690 | WP_056948148.1 | prepilin peptidase | Machinery gene |
| LSAF01_RS08855 (LSAF01_1799) | - | 1762558..1763130 (-) | 573 | WP_056948146.1 | isochorismatase family protein | - |
| LSAF01_RS08860 (LSAF01_1800) | rpoC | 1763304..1766948 (-) | 3645 | WP_056948144.1 | DNA-directed RNA polymerase subunit beta' | - |
Sequence
Protein
Download Length: 229 a.a. Molecular weight: 26176.47 Da Isoelectric Point: 7.1616
>NTDB_id=1148372 LSAF01_RS08850 WP_056948148.1 1761865..1762554(+) (comC) [Latilactobacillus sakei strain FLEC01]
MLLYLIIFYSGACCASFLTVCAWRLPIEKSIITPRSHCDCCQQPLAWYDLLPLFSYLYLHGHCRTCHAQIKPTFLFSELI
GGLLACFIFSESLSWDLAYLLVILFYISLVDLFYYILYPIPLFASLAPLFYLYWPQNHWLGAIVFCCGLLLTTYWASGFG
FGDVELLTILTLWVGLESVLRILLAACLICILFQGIKKIWPSPKQATRQIPFIPYISMGVVIILLQTPQ
MLLYLIIFYSGACCASFLTVCAWRLPIEKSIITPRSHCDCCQQPLAWYDLLPLFSYLYLHGHCRTCHAQIKPTFLFSELI
GGLLACFIFSESLSWDLAYLLVILFYISLVDLFYYILYPIPLFASLAPLFYLYWPQNHWLGAIVFCCGLLLTTYWASGFG
FGDVELLTILTLWVGLESVLRILLAACLICILFQGIKKIWPSPKQATRQIPFIPYISMGVVIILLQTPQ
Nucleotide
Download Length: 690 bp
>NTDB_id=1148372 LSAF01_RS08850 WP_056948148.1 1761865..1762554(+) (comC) [Latilactobacillus sakei strain FLEC01]
ATGTTACTTTATTTAATCATCTTTTATAGCGGTGCTTGTTGCGCCTCATTTCTAACAGTTTGCGCCTGGCGCTTACCCAT
CGAAAAGTCCATTATCACACCACGTTCGCACTGCGATTGCTGTCAGCAACCACTGGCTTGGTATGATTTATTACCACTAT
TCAGCTACTTATACTTACATGGCCACTGCCGCACTTGTCATGCTCAGATTAAGCCCACTTTTTTATTCAGCGAACTAATT
GGTGGTCTATTGGCCTGCTTCATTTTTAGCGAATCCCTTTCTTGGGACCTCGCTTATTTACTCGTGATTCTTTTTTACAT
CAGTCTCGTTGACCTCTTCTACTATATTCTCTATCCAATCCCCTTATTCGCATCACTGGCGCCCCTCTTCTATTTGTATT
GGCCACAGAATCATTGGCTAGGAGCCATCGTCTTTTGTTGCGGGCTGTTGCTCACCACTTACTGGGCGTCTGGTTTTGGT
TTTGGCGATGTCGAGTTACTCACTATCCTAACGTTGTGGGTCGGCCTTGAATCCGTTTTGCGAATTCTCTTAGCAGCCTG
TTTAATCTGTATTCTATTTCAAGGCATCAAAAAAATCTGGCCATCGCCTAAACAAGCGACGCGCCAGATTCCTTTTATTC
CCTATATATCGATGGGAGTGGTGATAATACTCCTACAAACACCACAATAA
ATGTTACTTTATTTAATCATCTTTTATAGCGGTGCTTGTTGCGCCTCATTTCTAACAGTTTGCGCCTGGCGCTTACCCAT
CGAAAAGTCCATTATCACACCACGTTCGCACTGCGATTGCTGTCAGCAACCACTGGCTTGGTATGATTTATTACCACTAT
TCAGCTACTTATACTTACATGGCCACTGCCGCACTTGTCATGCTCAGATTAAGCCCACTTTTTTATTCAGCGAACTAATT
GGTGGTCTATTGGCCTGCTTCATTTTTAGCGAATCCCTTTCTTGGGACCTCGCTTATTTACTCGTGATTCTTTTTTACAT
CAGTCTCGTTGACCTCTTCTACTATATTCTCTATCCAATCCCCTTATTCGCATCACTGGCGCCCCTCTTCTATTTGTATT
GGCCACAGAATCATTGGCTAGGAGCCATCGTCTTTTGTTGCGGGCTGTTGCTCACCACTTACTGGGCGTCTGGTTTTGGT
TTTGGCGATGTCGAGTTACTCACTATCCTAACGTTGTGGGTCGGCCTTGAATCCGTTTTGCGAATTCTCTTAGCAGCCTG
TTTAATCTGTATTCTATTTCAAGGCATCAAAAAAATCTGGCCATCGCCTAAACAAGCGACGCGCCAGATTCCTTTTATTC
CCTATATATCGATGGGAGTGGTGATAATACTCCTACAAACACCACAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comC | Latilactobacillus sakei subsp. sakei 23K |
98.253 |
100 |
0.983 |