Detailed information
Bioinformatically predicted
Overview
| Name | comGB | Type | Machinery gene |
| Locus tag | LSAF01_RS06515 | Genome accession | NZ_LT960777 |
| Coordinates | 1299635..1300642 (-) | Length | 335 a.a. |
| NCBI ID | WP_011375000.1 | Uniprot ID | Q38W24 |
| Organism | Latilactobacillus sakei strain FLEC01 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1294635..1305642
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LSAF01_RS06475 (LSAF01_1312) | - | 1294970..1295428 (-) | 459 | WP_011374992.1 | hypothetical protein | - |
| LSAF01_RS06480 (LSAF01_1313) | - | 1295483..1296679 (-) | 1197 | WP_011374993.1 | acetate/propionate family kinase | - |
| LSAF01_RS06485 (LSAF01_1314) | - | 1296701..1297711 (-) | 1011 | WP_099947695.1 | class I SAM-dependent methyltransferase | - |
| LSAF01_RS06490 (LSAF01_1315) | - | 1297835..1298173 (-) | 339 | WP_035145011.1 | hypothetical protein | - |
| LSAF01_RS06495 (LSAF01_1316) | comGF | 1298136..1298648 (-) | 513 | WP_035145013.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| LSAF01_RS06500 (LSAF01_1317) | comGE | 1298623..1298928 (-) | 306 | WP_016265375.1 | hypothetical protein | Machinery gene |
| LSAF01_RS06505 (LSAF01_1318) | comGD | 1298915..1299367 (-) | 453 | WP_035145016.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| LSAF01_RS06510 (LSAF01_1319) | comGC | 1299339..1299638 (-) | 300 | WP_011374999.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| LSAF01_RS06515 (LSAF01_1320) | comGB | 1299635..1300642 (-) | 1008 | WP_011375000.1 | type II secretion system F family protein | Machinery gene |
| LSAF01_RS06520 (LSAF01_1321) | comGA | 1300635..1301525 (-) | 891 | WP_016265378.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| LSAF01_RS06525 (LSAF01_1322) | - | 1301640..1302371 (-) | 732 | WP_011375002.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| LSAF01_RS06530 (LSAF01_1323) | - | 1302462..1302962 (-) | 501 | WP_099947696.1 | VanZ family protein | - |
| LSAF01_RS06535 (LSAF01_1324) | - | 1303059..1303433 (+) | 375 | WP_011375004.1 | hypothetical protein | - |
| LSAF01_RS06545 (LSAF01_1325) | - | 1303620..1305020 (-) | 1401 | WP_099947697.1 | hypothetical protein | - |
| LSAF01_RS06550 (LSAF01_1326) | - | 1305020..1305574 (-) | 555 | WP_099947698.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 335 a.a. Molecular weight: 38450.42 Da Isoelectric Point: 9.5442
>NTDB_id=1148365 LSAF01_RS06515 WP_011375000.1 1299635..1300642(-) (comGB) [Latilactobacillus sakei strain FLEC01]
MYKLRQQAQFYADFLQLLGRLLENGFSLQQAFAFLPIVFPKQRQWLNQVNQALEKGDSLAVSLAHADFPTDYVGQIELTE
LQGNLGQCLWHLGRIQSIRQKRRREIRGVLAYPLFLLAFLGGLIGLLRHYLLPEIAQITPESNQTGSPLSRIILWGFLLV
LVLLIMGSGLFMVYRRLPVLVRLQKAFKWPIIGRDIQQYYHYCLLFDLSTCLQNGLKLTEICALQKQLQQNTWLVTLVAQ
LEVVLASGQSLDAYLSRSAFFPQSLRLVLAKHNLTQQTTDEITMLANLQYTELQKQLQRKVSWLQPILFILIGLIIICTY
LSILLPLYQTMEGIS
MYKLRQQAQFYADFLQLLGRLLENGFSLQQAFAFLPIVFPKQRQWLNQVNQALEKGDSLAVSLAHADFPTDYVGQIELTE
LQGNLGQCLWHLGRIQSIRQKRRREIRGVLAYPLFLLAFLGGLIGLLRHYLLPEIAQITPESNQTGSPLSRIILWGFLLV
LVLLIMGSGLFMVYRRLPVLVRLQKAFKWPIIGRDIQQYYHYCLLFDLSTCLQNGLKLTEICALQKQLQQNTWLVTLVAQ
LEVVLASGQSLDAYLSRSAFFPQSLRLVLAKHNLTQQTTDEITMLANLQYTELQKQLQRKVSWLQPILFILIGLIIICTY
LSILLPLYQTMEGIS
Nucleotide
Download Length: 1008 bp
>NTDB_id=1148365 LSAF01_RS06515 WP_011375000.1 1299635..1300642(-) (comGB) [Latilactobacillus sakei strain FLEC01]
ATGTATAAGTTACGACAACAAGCGCAATTTTACGCTGATTTCTTGCAGTTATTGGGGCGGCTATTAGAGAACGGTTTCTC
ATTGCAACAAGCTTTTGCCTTCTTACCGATTGTCTTCCCAAAACAACGACAGTGGTTAAATCAGGTGAATCAAGCCCTTG
AAAAAGGCGACAGTCTAGCAGTCAGTTTAGCGCATGCTGATTTTCCAACTGATTATGTTGGTCAGATTGAACTAACCGAA
TTACAAGGTAATCTCGGGCAATGTTTATGGCATTTAGGCCGGATTCAAAGTATCCGCCAAAAACGCCGCCGAGAAATTCG
GGGTGTGCTAGCTTATCCGTTATTTCTTTTGGCTTTTTTAGGCGGCTTAATCGGTTTATTACGCCATTATTTATTACCTG
AGATTGCCCAGATAACGCCCGAGTCAAACCAGACAGGCTCGCCGCTTAGTCGCATCATATTGTGGGGCTTTTTGTTAGTG
CTAGTCCTTTTGATAATGGGCAGCGGTCTTTTTATGGTTTACCGCCGGTTACCGGTTTTAGTTCGATTACAAAAAGCGTT
CAAGTGGCCAATCATTGGGCGTGATATTCAGCAGTATTATCATTATTGTTTATTATTTGATTTGAGCACTTGTCTGCAAA
ACGGGCTTAAGTTAACAGAAATTTGTGCTTTACAGAAGCAACTGCAACAAAATACATGGCTGGTGACCTTGGTAGCACAA
TTGGAAGTCGTACTCGCTTCAGGGCAATCATTGGATGCTTATCTTAGTCGCTCTGCATTTTTTCCACAGTCGTTACGATT
GGTATTAGCTAAGCATAATCTCACGCAACAGACGACCGATGAGATCACCATGCTAGCTAACCTGCAGTATACGGAACTAC
AGAAGCAATTACAGCGGAAAGTGAGCTGGTTACAACCTATTTTATTTATCTTAATTGGGCTCATTATTATTTGTACGTAT
CTCAGTATTTTATTACCGCTGTATCAAACAATGGAGGGAATTTCATGA
ATGTATAAGTTACGACAACAAGCGCAATTTTACGCTGATTTCTTGCAGTTATTGGGGCGGCTATTAGAGAACGGTTTCTC
ATTGCAACAAGCTTTTGCCTTCTTACCGATTGTCTTCCCAAAACAACGACAGTGGTTAAATCAGGTGAATCAAGCCCTTG
AAAAAGGCGACAGTCTAGCAGTCAGTTTAGCGCATGCTGATTTTCCAACTGATTATGTTGGTCAGATTGAACTAACCGAA
TTACAAGGTAATCTCGGGCAATGTTTATGGCATTTAGGCCGGATTCAAAGTATCCGCCAAAAACGCCGCCGAGAAATTCG
GGGTGTGCTAGCTTATCCGTTATTTCTTTTGGCTTTTTTAGGCGGCTTAATCGGTTTATTACGCCATTATTTATTACCTG
AGATTGCCCAGATAACGCCCGAGTCAAACCAGACAGGCTCGCCGCTTAGTCGCATCATATTGTGGGGCTTTTTGTTAGTG
CTAGTCCTTTTGATAATGGGCAGCGGTCTTTTTATGGTTTACCGCCGGTTACCGGTTTTAGTTCGATTACAAAAAGCGTT
CAAGTGGCCAATCATTGGGCGTGATATTCAGCAGTATTATCATTATTGTTTATTATTTGATTTGAGCACTTGTCTGCAAA
ACGGGCTTAAGTTAACAGAAATTTGTGCTTTACAGAAGCAACTGCAACAAAATACATGGCTGGTGACCTTGGTAGCACAA
TTGGAAGTCGTACTCGCTTCAGGGCAATCATTGGATGCTTATCTTAGTCGCTCTGCATTTTTTCCACAGTCGTTACGATT
GGTATTAGCTAAGCATAATCTCACGCAACAGACGACCGATGAGATCACCATGCTAGCTAACCTGCAGTATACGGAACTAC
AGAAGCAATTACAGCGGAAAGTGAGCTGGTTACAACCTATTTTATTTATCTTAATTGGGCTCATTATTATTTGTACGTAT
CTCAGTATTTTATTACCGCTGTATCAAACAATGGAGGGAATTTCATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGB | Latilactobacillus sakei subsp. sakei 23K |
100 |
100 |
1 |