Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   LSAF01_RS05350 Genome accession   NZ_LT960777
Coordinates   1072708..1073415 (-) Length   235 a.a.
NCBI ID   WP_231952379.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain FLEC01     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1067708..1078415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSAF01_RS05325 (LSAF01_1071) rpsO 1068002..1068271 (-) 270 WP_011374766.1 30S ribosomal protein S15 -
  LSAF01_RS05330 (LSAF01_1072) rpsT 1068550..1068804 (+) 255 WP_011374767.1 30S ribosomal protein S20 -
  LSAF01_RS05335 (LSAF01_1073) holA 1068873..1069901 (-) 1029 WP_011374768.1 DNA polymerase III subunit delta -
  LSAF01_RS05340 (LSAF01_1074) comEC 1069898..1072165 (-) 2268 WP_099947352.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LSAF01_RS05345 (LSAF01_1075) - 1072162..1072650 (-) 489 WP_011374770.1 ComE operon protein 2 -
  LSAF01_RS05350 (LSAF01_1076) comEA 1072708..1073415 (-) 708 WP_231952379.1 helix-hairpin-helix domain-containing protein Machinery gene
  LSAF01_RS05355 (LSAF01_1077) - 1073492..1074538 (-) 1047 WP_056946687.1 SepM family pheromone-processing serine protease -
  LSAF01_RS05360 (LSAF01_1078) coaD 1074540..1075037 (-) 498 WP_011374773.1 pantetheine-phosphate adenylyltransferase -
  LSAF01_RS05365 (LSAF01_1079) rsmD 1075050..1075604 (-) 555 WP_011374774.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  LSAF01_RS05370 (LSAF01_1080) - 1075609..1075899 (-) 291 WP_011374775.1 YlbG family protein -
  LSAF01_RS05375 (LSAF01_1081) - 1075923..1077011 (-) 1089 WP_011374776.1 CAP-associated domain-containing protein -
  LSAF01_RS05380 (LSAF01_1082) - 1077022..1078209 (-) 1188 WP_011374777.1 FtsW/RodA/SpoVE family cell cycle protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26146.73 Da        Isoelectric Point: 9.7682

>NTDB_id=1148357 LSAF01_RS05350 WP_231952379.1 1072708..1073415(-) (comEA) [Latilactobacillus sakei strain FLEC01]
MMWQDYWQRYRRFWWVPCLVLLGIIAGGFYWHQSQQKQKVTQNEQLLATSASKTKPATKKTHQAATKKKGGFVDIKGAVV
YPGIYPITVSETRLFEVLKNAGGPTDAADTKRLNLAQKLTDQLIIYIPKKGEVVTDQELIQAPQQIATTSERTQEQASTG
TSANASSTSDTAKIDLNQADSTQLQTLNGIGPKKAEQIIAYRDEQGKFKQIEDLQKVGGIGPKTFEQLQSQICVN

Nucleotide


Download         Length: 708 bp        

>NTDB_id=1148357 LSAF01_RS05350 WP_231952379.1 1072708..1073415(-) (comEA) [Latilactobacillus sakei strain FLEC01]
ATGATGTGGCAAGATTATTGGCAGCGATATCGGCGTTTTTGGTGGGTGCCTTGCTTAGTGCTATTGGGGATCATCGCGGG
TGGCTTTTATTGGCATCAATCGCAACAAAAACAAAAAGTAACGCAAAATGAGCAACTGCTAGCAACCAGTGCGTCTAAAA
CAAAACCCGCTACTAAGAAGACACACCAAGCGGCAACCAAGAAAAAAGGCGGTTTTGTCGATATAAAAGGTGCGGTGGTC
TACCCGGGAATTTATCCGATCACAGTCTCTGAAACGCGCTTATTTGAGGTGCTCAAAAATGCAGGTGGTCCGACTGATGC
GGCTGATACCAAGCGGCTTAATTTAGCTCAAAAGTTAACCGATCAACTGATTATTTATATTCCGAAAAAAGGAGAGGTGG
TTACTGATCAAGAACTCATTCAAGCGCCACAACAAATCGCAACGACCAGTGAGCGTACGCAAGAACAGGCATCAACTGGG
ACAAGTGCGAATGCATCGAGCACGAGTGACACTGCTAAAATCGATTTGAATCAGGCTGATAGTACGCAGCTTCAGACCCT
CAATGGCATTGGCCCCAAGAAAGCTGAACAAATAATTGCTTATCGTGATGAACAAGGAAAATTTAAACAGATTGAAGATC
TACAAAAAGTCGGCGGGATTGGTCCGAAGACGTTTGAACAATTGCAATCACAAATTTGTGTGAATTAG

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(73-124)

Helix-hairpin-helix motif (HHH_3)

(172-233)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Latilactobacillus sakei subsp. sakei 23K

100

100

1
  comEA Lactococcus lactis subsp. cremoris KW2

36.797

98.298

0.362

Multiple sequence alignment