Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   LSAF01_RS04970 Genome accession   NZ_LT960777
Coordinates   991143..992009 (-) Length   288 a.a.
NCBI ID   WP_011374694.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain FLEC01     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 986143..997009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSAF01_RS04955 (LSAF01_0993) topA 987378..989462 (-) 2085 WP_056947604.1 type I DNA topoisomerase -
  LSAF01_RS04960 (LSAF01_0994) - 989713..990147 (-) 435 WP_011374692.1 Rrf2 family transcriptional regulator -
  LSAF01_RS04965 (LSAF01_0995) - 990176..991042 (-) 867 WP_099947660.1 NAD(P)H-binding protein -
  LSAF01_RS04970 (LSAF01_0996) dprA 991143..992009 (-) 867 WP_011374694.1 DNA-processing protein DprA Machinery gene
  LSAF01_RS04975 (LSAF01_0997) - 992064..992825 (-) 762 WP_011374695.1 ribonuclease HII -
  LSAF01_RS04980 (LSAF01_0998) ylqF 992827..993678 (-) 852 WP_167524711.1 ribosome biogenesis GTPase YlqF -
  LSAF01_RS04985 (LSAF01_0999) lepB 993810..994340 (-) 531 WP_025015770.1 signal peptidase I -
  LSAF01_RS04990 (LSAF01_1000) - 994365..994589 (-) 225 WP_011374698.1 YozE family protein -
  LSAF01_RS04995 (LSAF01_1001) - 994600..995229 (-) 630 WP_056947600.1 YpmS family protein -
  LSAF01_RS05000 (LSAF01_1002) - 995242..996153 (-) 912 WP_231953161.1 SGNH/GDSL hydrolase family protein -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 31821.78 Da        Isoelectric Point: 8.8338

>NTDB_id=1148353 LSAF01_RS04970 WP_011374694.1 991143..992009(-) (dprA) [Latilactobacillus sakei strain FLEC01]
MLTKNQLLLKVHLAAGFGTISELRLAAWLSTSHNWALSALEIAQIARLPERYWPTFQASFQSTTLQRQCIDHEVRTTYLT
ILDKDYPQRLLETYLPPVLLFYRGDLRLLKQPCLAVVGARQATHYSKQSLEQLLQGLTATTIISGLAQGADAMAHEVALQ
RGLAPIGVIGTGINCSYPPQNEHLQQVVAEKGLLLSEYALGTPARRYQFPARNKIIAGLCHSLIVTEARHKSGSLITANL
ALQANRNVYAIPGRIDQSLSQGCNQLIAAGATPLLDKNILIEELRYFD

Nucleotide


Download         Length: 867 bp        

>NTDB_id=1148353 LSAF01_RS04970 WP_011374694.1 991143..992009(-) (dprA) [Latilactobacillus sakei strain FLEC01]
GTGTTAACTAAAAATCAATTACTCTTAAAAGTACATTTAGCGGCGGGTTTTGGGACTATTAGTGAATTACGCTTGGCGGC
GTGGCTATCAACCAGTCATAATTGGGCGTTATCGGCGTTAGAAATTGCGCAGATTGCGCGCTTGCCGGAACGTTATTGGC
CGACTTTTCAAGCAAGTTTTCAAAGTACAACCTTACAACGCCAATGCATCGACCATGAAGTTCGAACGACTTATTTAACC
ATCTTAGATAAAGATTACCCACAACGCTTATTGGAAACCTATTTGCCGCCCGTTTTGTTATTTTATCGTGGTGATTTAAG
ATTGTTAAAACAGCCATGTCTCGCGGTAGTCGGGGCGCGTCAAGCGACTCATTATTCTAAACAATCACTAGAACAGTTAT
TACAAGGACTAACTGCCACTACGATTATTAGTGGGTTAGCACAAGGAGCGGATGCGATGGCCCACGAAGTTGCCTTACAG
CGTGGTTTGGCCCCAATTGGGGTGATTGGCACGGGCATTAATTGCAGTTATCCACCACAAAATGAGCATTTACAACAGGT
AGTTGCTGAAAAAGGTTTGTTATTATCTGAATACGCTCTTGGTACACCAGCCCGGCGCTATCAATTTCCAGCCCGCAATA
AAATCATCGCGGGGTTATGTCATAGTTTAATTGTGACGGAAGCCCGGCACAAGAGTGGTAGCTTGATTACCGCTAACTTG
GCCCTTCAAGCTAATCGCAATGTCTATGCAATTCCGGGGCGCATTGATCAATCACTGTCACAGGGGTGCAACCAATTAAT
CGCCGCGGGAGCGACACCATTGTTAGATAAAAACATATTAATAGAAGAACTACGTTATTTTGATTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Latilactobacillus sakei subsp. sakei 23K

100

100

1

Multiple sequence alignment