Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   VTAP4600_RS17700 Genome accession   NZ_LT960612
Coordinates   111994..113094 (-) Length   366 a.a.
NCBI ID   WP_102524133.1    Uniprot ID   A0A2N8ZIL5
Organism   Vibrio tapetis subsp. tapetis isolate Vibrio tapetis CECT4600     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 106994..118094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VTAP4600_RS17690 (VTAP4600_B0124) - 108093..109352 (+) 1260 WP_102524131.1 hydroxymethylglutaryl-CoA reductase -
  VTAP4600_RS17695 (VTAP4600_B0125) - 109417..111984 (-) 2568 WP_102524132.1 LuxQ periplasmic sensor domain-containing protein -
  VTAP4600_RS17700 (VTAP4600_B0126) luxP 111994..113094 (-) 1101 WP_102524133.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  VTAP4600_RS17705 (VTAP4600_B0127) - 113257..113892 (-) 636 WP_102524134.1 response regulator -
  VTAP4600_RS17710 (VTAP4600_B0128) narQ 113879..115603 (-) 1725 WP_102524135.1 nitrate/nitrite two-component system sensor histidine kinase NarQ -
  VTAP4600_RS17715 (VTAP4600_B0129) napF 116038..116529 (+) 492 WP_102524136.1 ferredoxin-type protein NapF -
  VTAP4600_RS17720 (VTAP4600_B0130) - 116541..116795 (+) 255 WP_102524137.1 chaperone NapD -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 41356.83 Da        Isoelectric Point: 5.2855

>NTDB_id=1148330 VTAP4600_RS17700 WP_102524133.1 111994..113094(-) (luxP) [Vibrio tapetis subsp. tapetis isolate Vibrio tapetis CECT4600]
MKWQGKLISMLALIMPISATSGQLLSGFWEYQEFLSEFPDQQALTNQLSRAVRHDAIPLVSEQTEPITISVVYPGEQISD
YWRRNIKAFSLRMDELGIEYKIDQVFTRPTVDIRQQSVSLMEALHKKSDYLIFTLDTTRHRKFIEHVLVNRDTKLILQNI
TTPVKAWQDKQPFLYVGFDHATGSRELAKHFRQQYDEGSNYSVLYFSQGYISEMRGDTFISAMDDSDVKYNLKSSYYTKA
TRKSGYEAAKAAVNTNQDLQFIYVCSTDVALGASDALAELGRTDIAINGWGGGSAELDALMTGDLDLTVMRMNDDTGVAM
AEAIKLDIQKKPVPTVYSGEFEVVTSGDSASKLNELKLKAFRYSDR

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=1148330 VTAP4600_RS17700 WP_102524133.1 111994..113094(-) (luxP) [Vibrio tapetis subsp. tapetis isolate Vibrio tapetis CECT4600]
ATGAAATGGCAGGGAAAGCTTATAAGTATGTTGGCATTGATAATGCCAATTAGTGCAACTAGCGGCCAGTTACTTTCCGG
GTTCTGGGAGTATCAGGAATTTTTGTCTGAATTTCCAGACCAACAGGCTCTTACTAATCAACTTAGCCGTGCCGTTCGTC
ACGATGCCATTCCATTGGTAAGTGAACAAACAGAGCCGATTACCATTTCAGTCGTTTATCCTGGAGAGCAGATCTCAGAT
TATTGGCGAAGAAATATTAAGGCGTTTAGCCTTCGCATGGATGAGCTCGGGATAGAGTACAAGATTGACCAAGTTTTTAC
TCGGCCAACCGTGGATATTCGCCAGCAAAGTGTCTCTTTAATGGAAGCACTTCATAAAAAAAGTGACTATTTAATTTTTA
CACTAGACACGACACGTCATCGTAAATTTATTGAGCATGTCTTGGTTAATCGCGACACCAAGTTAATTTTGCAAAACATT
ACAACTCCCGTAAAAGCTTGGCAGGACAAACAGCCGTTTTTATACGTGGGTTTTGATCACGCAACAGGTAGCCGAGAACT
GGCTAAGCACTTTCGTCAGCAATACGATGAAGGAAGTAACTATTCTGTGCTGTATTTTTCACAGGGCTATATCAGTGAGA
TGCGCGGTGACACCTTCATTTCAGCCATGGATGACTCTGATGTAAAGTACAATTTAAAGTCTTCGTATTATACAAAGGCG
ACCCGAAAGAGTGGATATGAAGCGGCGAAAGCGGCCGTTAACACCAATCAAGATCTCCAATTTATCTATGTTTGTTCCAC
TGATGTGGCTTTGGGAGCCAGTGATGCTCTAGCCGAGTTAGGGCGTACTGATATCGCCATCAATGGTTGGGGAGGAGGGT
CGGCTGAGCTTGATGCCCTGATGACTGGAGATTTGGACTTAACCGTCATGCGAATGAATGATGATACCGGAGTCGCAATG
GCTGAAGCGATTAAGCTCGATATTCAAAAGAAGCCGGTTCCAACGGTTTATTCTGGTGAGTTTGAGGTGGTGACTAGCGG
TGATAGCGCAAGCAAACTCAACGAATTGAAACTCAAAGCCTTTAGATATTCTGATAGATAA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N8ZIL5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

63.636

99.18

0.631

Multiple sequence alignment