Detailed information NTG1148317

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: VTAP4600_RS13385
• Genome accession: NZ_LT960611
• Coordinates: 2996701..2997705 (+)
• Length: 334 a.a.
• NCBI ID: WP_102523246.1
• Uniprot ID: A0A2N8ZG00
• Organism: Vibrio tapetis subsp. tapetis isolate Vibrio tapetis CECT4600
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 2991701..3002705

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VTAP4600_RS13365 (VTAP4600_A2853)	metJ	2991742..2992062 (+)	321	WP_004415993.1	met regulon transcriptional regulator MetJ	-
VTAP4600_RS13370 (VTAP4600_A2854)	-	2992117..2993376 (-)	1260	WP_102523243.1	malic enzyme-like NAD(P)-binding protein	-
VTAP4600_RS13375 (VTAP4600_A2855)	rpmE	2993629..2993844 (-)	216	WP_102523244.1	50S ribosomal protein L31	-
VTAP4600_RS13380 (VTAP4600_A2856)	priA	2994121..2996322 (+)	2202	WP_102523245.1	primosomal protein N'	-
VTAP4600_RS13385 (VTAP4600_A2857)	cytR	2996701..2997705 (+)	1005	WP_102523246.1	DNA-binding transcriptional regulator CytR	Regulator
VTAP4600_RS13390 (VTAP4600_A2858)	-	2997813..2998349 (+)	537	WP_102523247.1	SPOR domain-containing protein	-
VTAP4600_RS13395 (VTAP4600_A2859)	hslV	2998522..2999055 (+)	534	WP_102523248.1	ATP-dependent protease subunit HslV	-
VTAP4600_RS13400 (VTAP4600_A2860)	hslU	2999070..3000401 (+)	1332	WP_102523249.1	HslU--HslV peptidase ATPase subunit	-
VTAP4600_RS13405 (VTAP4600_A2861)	-	3000498..3001415 (+)	918	WP_102523250.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
VTAP4600_RS13410 (VTAP4600_A2863)	rraA	3001491..3002018 (+)	528	WP_102523992.1	ribonuclease E activity regulator RraA	-
VTAP4600_RS13415 (VTAP4600_A2864)	zapB	3002200..3002442 (-)	243	WP_102523251.1	cell division protein ZapB	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 36826.23 Da
• Isoelectric Point: 5.4823

>NTDB_id=1148317 VTAP4600_RS13385 WP_102523246.1 2996701..2997705(+) (cytR) [Vibrio tapetis subsp. tapetis isolate Vibrio tapetis CECT4600]
MATMKDVAQLAGVSTATVSRALMNPEKVSSTTRKRIEDAVMESGYSPNSLARNLRRNESKTIITIVPDICDSYFTEIIRG
IEDAAVENGYLVLLGNSGQQQKRESSLVNLVFTKQADGMLLLGTHLPFDVSKPEQKNLPPLVMACEFAPELELPTVHIDN
LTSSFEAVNYLTQMGHRNIAQITGPAEAVLCQFRSQGYQQALRRSGIPMNPTYKEEGDFSFESGERAIAKLLSLPEPPTA
IFCHNDVMAIGAIQKAKKLGFKVPEDISFVGFDNVQFSEYCDPPLTTISQPRYEIGRQAMLMLLELLKGNDVQAGSRLLE
TELIIRKSAAPPRS

Nucleotide

• Length: 1005 bp

>NTDB_id=1148317 VTAP4600_RS13385 WP_102523246.1 2996701..2997705(+) (cytR) [Vibrio tapetis subsp. tapetis isolate Vibrio tapetis CECT4600]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGAGTATCAACAGCCACCGTTTCGCGCGCGTTAATGAACCCTGAAAA
AGTGTCATCAACCACTCGAAAGCGAATTGAAGACGCTGTCATGGAATCGGGATATTCACCAAATTCCCTTGCACGAAATT
TACGTCGAAATGAATCCAAGACCATTATTACTATCGTGCCTGATATCTGTGATTCTTACTTTACGGAGATCATCCGTGGC
ATCGAAGATGCGGCGGTAGAAAATGGCTATCTTGTACTACTGGGCAATAGTGGTCAGCAACAAAAACGAGAAAGTTCGTT
GGTAAACCTCGTCTTTACCAAACAAGCCGACGGCATGCTACTGTTAGGGACGCATCTTCCTTTTGATGTAAGTAAGCCGG
AACAAAAAAACTTACCGCCACTTGTGATGGCGTGTGAATTTGCCCCAGAGCTTGAGTTGCCAACCGTTCACATTGATAAC
CTGACGTCTTCATTTGAAGCGGTTAACTACCTCACTCAAATGGGACACAGAAATATCGCGCAAATTACCGGTCCTGCCGA
GGCGGTATTATGTCAATTCCGCTCTCAAGGATACCAACAAGCATTGCGTCGCTCAGGTATTCCAATGAATCCAACCTACA
AAGAAGAAGGCGACTTTTCGTTTGAATCCGGTGAACGAGCGATTGCCAAATTGCTGTCTTTACCTGAGCCACCGACCGCC
ATTTTCTGTCACAACGATGTGATGGCCATCGGCGCGATTCAAAAAGCCAAAAAGTTAGGTTTTAAAGTACCAGAAGACAT
CTCGTTTGTTGGCTTTGACAACGTGCAATTTTCTGAGTATTGCGATCCTCCATTGACGACGATTTCTCAACCACGCTATG
AAATTGGCCGTCAAGCTATGTTGATGTTGCTAGAACTATTAAAAGGCAATGATGTACAGGCTGGATCGCGATTACTAGAA
ACAGAACTGATCATTCGTAAAAGTGCCGCTCCACCGAGAAGTTAG

Domains

Predicted by InterproScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

3D structure

• AlphaFold DB: A0A2N8ZG00

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	81.627	99.401	0.811
cytR	Vibrio parahaemolyticus RIMD 2210633	81.381	99.701	0.811