Detailed information NTG1148230

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: ODI_RS18480
• Genome accession: NZ_LT907988
• Coordinates: 3993049..3994287 (-)
• Length: 412 a.a.
• NCBI ID: WP_067749834.1
• Uniprot ID: A0A1C3JXQ9
• Organism: Orrella dioscoreae isolate Orrdi1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3988049..3999287

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ODI_RS18460 (ODI_03468)	-	3988592..3989551 (-)	960	WP_231968093.1	ABC transporter substrate-binding protein	-
ODI_RS18465 (ODI_03469)	-	3989668..3990378 (+)	711	WP_067749833.1	Crp/Fnr family transcriptional regulator	-
ODI_RS18470 (ODI_03470)	-	3990439..3991158 (+)	720	WP_082985144.1	DUF1971 domain-containing protein	-
ODI_RS18475 (ODI_03471)	-	3991365..3992978 (+)	1614	WP_067749925.1	CYTH and CHAD domain-containing protein	-
ODI_RS18480 (ODI_03472)	pilA	3993049..3994287 (-)	1239	WP_067749834.1	signal recognition particle-docking protein FtsY	Machinery gene
ODI_RS18485 (ODI_03473)	rsmD	3994286..3994852 (+)	567	WP_067749836.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
ODI_RS18490 (ODI_03474)	coaD	3994904..3995413 (+)	510	WP_067749838.1	pantetheine-phosphate adenylyltransferase	-
ODI_RS18495 (ODI_03475)	-	3995421..3995669 (+)	249	WP_067749839.1	YfhL family 4Fe-4S dicluster ferredoxin	-
ODI_RS18500 (ODI_03476)	-	3995688..3996074 (-)	387	WP_067749852.1	MOSC N-terminal beta barrel domain-containing protein	-
ODI_RS18505 (ODI_03477)	-	3996116..3998749 (-)	2634	WP_067749853.1	AsmA family protein	-

Sequence

Protein

• Length: 412 a.a.
• Molecular weight: 43142.12 Da
• Isoelectric Point: 4.7977

>NTDB_id=1148230 ODI_RS18480 WP_067749834.1 3993049..3994287(-) (pilA) [Orrella dioscoreae isolate Orrdi1]
MFNFFKKKPPVPAQPETREDDAARHAPPVETPATPAADAPERDELVPATPSVPQPAPPVEAVTPEAPPAPEPKPEPEPEP
EPEIETPAPVAVVPPAPVAEAETAPAKPEKSSWLSRLRSGLSRTGKSLGGLFVGVKVDENLFEELETALIMADAGVEATA
SLLDGLRARVRKERIEDAAQVKTALRELLTEHLRPLERAFDLSRAQPLVVMIAGVNGAGKTTSIGKLAHAFQARGASVLL
AAGDTFRAAAREQLIEWGSRNNVTVISQEGGDPAAVAFDAVNAGRARGAGVVMIDTAGRLPTQLHLMEELRKVRRVVGKA
DADAPHEVLLVLDGNTGQNALAQIRAFDAAINLTGLVVTKLDGTAKGGTLAAVAAGSQGVRPIPVYWIGVGEGLQDLQPF
VAADFAAALLGD

Nucleotide

• Length: 1239 bp

>NTDB_id=1148230 ODI_RS18480 WP_067749834.1 3993049..3994287(-) (pilA) [Orrella dioscoreae isolate Orrdi1]
ATGTTTAATTTCTTCAAGAAAAAGCCGCCGGTTCCGGCCCAGCCCGAGACCCGCGAGGACGACGCCGCGCGCCATGCGCC
GCCTGTCGAAACGCCTGCCACGCCTGCCGCCGATGCGCCCGAGCGAGATGAACTCGTGCCGGCCACGCCATCGGTGCCGC
AGCCGGCACCGCCTGTCGAGGCCGTGACGCCCGAGGCGCCGCCAGCGCCGGAACCGAAACCGGAACCGGAACCCGAGCCT
GAACCCGAGATCGAGACCCCGGCGCCTGTCGCCGTCGTCCCGCCTGCGCCGGTGGCCGAAGCCGAGACCGCACCCGCCAA
GCCCGAGAAATCCTCCTGGCTCAGCCGCCTGCGTTCCGGCCTGTCCCGGACAGGCAAGAGCCTGGGCGGCCTGTTCGTGG
GCGTCAAGGTCGACGAAAACCTGTTCGAGGAACTGGAAACGGCGCTCATTATGGCCGATGCGGGCGTCGAAGCCACCGCC
AGCCTGCTGGACGGCCTGCGTGCCCGCGTGCGCAAGGAGCGCATCGAGGACGCCGCCCAGGTCAAGACGGCTCTGCGCGA
ACTGTTGACCGAACACCTGAGGCCGCTCGAGCGTGCGTTCGACCTGTCGCGCGCCCAGCCGCTGGTGGTCATGATCGCCG
GCGTCAACGGCGCGGGCAAGACCACCTCCATTGGCAAGCTGGCCCACGCCTTCCAGGCGCGCGGCGCCAGCGTGCTGCTG
GCCGCGGGCGACACCTTCCGCGCCGCGGCGCGTGAACAGCTCATCGAATGGGGCTCGCGCAACAACGTCACCGTCATTTC
GCAGGAAGGCGGCGATCCGGCCGCCGTGGCCTTCGACGCCGTCAATGCCGGCCGTGCCCGTGGCGCCGGCGTGGTCATGA
TCGACACCGCCGGCCGCCTGCCGACGCAACTGCACCTGATGGAAGAGCTGCGCAAGGTGCGCCGCGTCGTCGGCAAGGCC
GACGCCGACGCGCCGCACGAGGTCCTGCTGGTGCTGGACGGCAACACCGGCCAGAACGCGCTGGCCCAGATCCGTGCCTT
CGACGCCGCCATCAACCTGACCGGCCTGGTGGTCACCAAGCTGGACGGCACCGCCAAGGGGGGCACGCTGGCCGCGGTGG
CCGCGGGCAGCCAGGGCGTGCGCCCCATCCCGGTCTACTGGATCGGCGTGGGCGAGGGCCTGCAAGACCTGCAGCCCTTC
GTGGCCGCGGACTTCGCGGCGGCGCTGCTGGGCGACTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (125-187)

• SRP54-type protein, GTPase domain (SRP54) (208-410)

3D structure

• AlphaFold DB: A0A1C3JXQ9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	49.406	100	0.505