Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ODI_RS08150 Genome accession   NZ_LT907988
Coordinates   1746008..1747366 (+) Length   452 a.a.
NCBI ID   WP_067759466.1    Uniprot ID   A0A1C3K7Z8
Organism   Orrella dioscoreae isolate Orrdi1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1741008..1752366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ODI_RS08125 (ODI_00578) crcB 1741406..1741804 (+) 399 WP_067759475.1 fluoride efflux transporter CrcB -
  ODI_RS08130 (ODI_00577) hpnE 1741758..1743107 (-) 1350 WP_067759472.1 hydroxysqualene dehydroxylase HpnE -
  ODI_RS08135 (ODI_00576) hpnD 1743104..1743967 (-) 864 WP_067759470.1 presqualene diphosphate synthase HpnD -
  ODI_RS08140 (ODI_00575) hpnC 1744140..1744970 (-) 831 WP_067759468.1 squalene synthase HpnC -
  ODI_RS08145 (ODI_00574) - 1745209..1745928 (+) 720 WP_067759818.1 SDR family oxidoreductase -
  ODI_RS08150 (ODI_00573) radA 1746008..1747366 (+) 1359 WP_067759466.1 DNA repair protein RadA Machinery gene
  ODI_RS08155 (ODI_00572) - 1747409..1748191 (+) 783 WP_067759464.1 sulfite exporter TauE/SafE family protein -
  ODI_RS22260 (ODI_00571) - 1748372..1748620 (+) 249 WP_067759462.1 hypothetical protein -
  ODI_RS08165 (ODI_00570) - 1748872..1751421 (+) 2550 WP_082985514.1 FtsX-like permease family protein -
  ODI_RS08170 (ODI_00569) - 1751421..1751840 (+) 420 WP_067759459.1 group II truncated hemoglobin -

Sequence

Protein


Download         Length: 452 a.a.        Molecular weight: 48039.17 Da        Isoelectric Point: 6.9549

>NTDB_id=1148221 ODI_RS08150 WP_067759466.1 1746008..1747366(+) (radA) [Orrella dioscoreae isolate Orrdi1]
MAKTKTQFVCSECGGTSPKWQGKCPHCNAWNTLEETLEPSAAAGGHRYAPLAASTPVRTLSEIEARELPRLPTGLEEFDR
VLGGGLVAGGVVLIGGDPGIGKSTLLLQALVSMSGAARVLYVTGEESAEQVALRARRLGVTSDNVDLLAEIRLESIQAAL
SEQKPAVAVIDSIQTVYSGELTAAPGSVSQVRECAAQLTRYAKQTGIPIVMIGHVTKDGTLAGPRVLEHIVDTVLYFEGD
THSSFRLVRAFKNRYGAVNELGVFAMTDRGLRGVANPSALFLSQHAQQVSGSCVMATQEGTRPLLVEIQALVDSAHAPNP
KRLTVGLEGNRLAMLLAVLHRHAGVATYDQDVFVNAVGGVRIAEPAADLPVLLAIMSSLRDRPLPQGMIAFGEVGLAGEI
RPAPRGQERLREAAKLGFNVALVPKANAPRQPIEGLEVWAVDRLDAALERLR

Nucleotide


Download         Length: 1359 bp        

>NTDB_id=1148221 ODI_RS08150 WP_067759466.1 1746008..1747366(+) (radA) [Orrella dioscoreae isolate Orrdi1]
ATGGCCAAGACTAAAACGCAGTTCGTCTGTTCCGAGTGTGGCGGCACCTCGCCGAAGTGGCAGGGCAAGTGCCCGCATTG
CAACGCCTGGAACACGCTCGAGGAAACCCTGGAACCGTCGGCCGCGGCCGGCGGGCACCGCTATGCGCCGCTGGCGGCCA
GCACGCCCGTGCGCACGCTGTCCGAGATCGAGGCCCGCGAGTTGCCGCGCCTGCCCACCGGGCTGGAAGAGTTCGACAGG
GTGCTGGGCGGCGGCCTGGTGGCGGGCGGCGTGGTGCTCATCGGCGGCGATCCGGGCATCGGCAAGTCCACGCTGCTGCT
GCAGGCGCTGGTGTCCATGTCGGGCGCGGCCCGCGTGCTCTACGTCACGGGCGAAGAGTCCGCCGAGCAGGTCGCCTTGC
GCGCCCGCCGGCTGGGCGTCACCTCGGACAATGTCGACCTGCTGGCCGAGATCCGGCTGGAATCCATCCAGGCGGCGCTC
TCCGAGCAGAAGCCGGCCGTGGCCGTCATCGATTCCATCCAGACCGTCTATTCGGGCGAACTCACCGCCGCGCCCGGGTC
GGTGTCGCAGGTGCGCGAGTGCGCCGCGCAGCTCACCCGCTATGCCAAGCAGACCGGCATCCCCATCGTGATGATCGGCC
ACGTCACCAAGGACGGCACGCTGGCCGGTCCGCGCGTGCTCGAGCACATCGTCGACACGGTGCTGTATTTCGAAGGCGAC
ACGCACTCCTCTTTCCGCCTGGTGCGCGCCTTCAAGAACCGCTATGGCGCGGTCAACGAGCTGGGCGTCTTCGCCATGAC
CGACCGCGGCTTGCGCGGCGTGGCCAATCCATCGGCGCTGTTCCTGTCGCAGCATGCCCAGCAGGTGTCCGGTTCCTGCG
TGATGGCGACGCAGGAGGGCACGCGGCCCCTGCTGGTCGAGATCCAGGCCCTGGTGGACAGCGCGCATGCGCCCAATCCC
AAGCGCCTGACCGTGGGGCTGGAGGGCAACCGCCTGGCCATGCTGCTGGCGGTGCTGCACCGGCACGCGGGCGTGGCCAC
CTATGACCAGGATGTCTTCGTCAATGCGGTGGGCGGCGTGCGTATCGCCGAGCCCGCGGCCGACCTGCCGGTGCTGCTGG
CCATCATGTCCTCCTTGCGCGACCGGCCCTTGCCCCAGGGCATGATCGCCTTCGGCGAAGTCGGCCTGGCGGGCGAGATC
CGCCCCGCGCCACGCGGCCAGGAGCGCCTGCGCGAGGCCGCGAAGCTGGGCTTCAACGTGGCGCTGGTGCCCAAGGCCAA
CGCGCCGCGCCAGCCCATCGAGGGGCTGGAGGTCTGGGCGGTGGATCGGCTGGATGCGGCGCTGGAGCGCTTGCGCTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(73-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C3K7Z8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.561

100

0.5
  radA Streptococcus mitis NCTC 12261

46.46

100

0.465
  radA Streptococcus pneumoniae D39

48.706

94.027

0.458
  radA Streptococcus pneumoniae TIGR4

48.706

94.027

0.458
  radA Streptococcus mitis SK321

48.706

94.027

0.458
  radA Streptococcus pneumoniae R6

48.706

94.027

0.458
  radA Streptococcus pneumoniae Rx1

48.706

94.027

0.458

Multiple sequence alignment