Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   FY484_RS13305 Genome accession   NZ_LT906614
Coordinates   2844071..2845078 (-) Length   335 a.a.
NCBI ID   WP_000224452.1    Uniprot ID   A0A085RG68
Organism   Vibrio cholerae O1 biovar El Tor str. N16961     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2839071..2850078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY484_RS13280 rraA 2839646..2840161 (-) 516 WP_000456236.1 ribonuclease E activity regulator RraA -
  FY484_RS13285 - 2840236..2841153 (-) 918 WP_001066162.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  FY484_RS13290 hslU 2841257..2842588 (-) 1332 WP_001293370.1 HslU--HslV peptidase ATPase subunit -
  FY484_RS13295 hslV 2842654..2843211 (-) 558 WP_000208249.1 ATP-dependent protease subunit HslV -
  FY484_RS13300 - 2843348..2843899 (-) 552 WP_001884022.1 SPOR domain-containing protein -
  FY484_RS13305 cytR 2844071..2845078 (-) 1008 WP_000224452.1 DNA-binding transcriptional regulator CytR Regulator
  FY484_RS13310 priA 2845384..2847588 (-) 2205 WP_001247858.1 primosomal protein N' -
  FY484_RS13315 rpmE 2847843..2848061 (+) 219 WP_000643446.1 50S ribosomal protein L31 -
  FY484_RS13320 - 2848369..2849646 (+) 1278 WP_001278588.1 malic enzyme-like NAD(P)-binding protein -
  FY484_RS13325 metJ 2849757..2850074 (-) 318 WP_000796267.1 met regulon transcriptional regulator MetJ -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 37018.59 Da        Isoelectric Point: 7.0759

>NTDB_id=1148171 FY484_RS13305 WP_000224452.1 2844071..2845078(-) (cytR) [Vibrio cholerae O1 biovar El Tor str. N16961]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLVVRESAAPPSKK

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=1148171 FY484_RS13305 WP_000224452.1 2844071..2845078(-) (cytR) [Vibrio cholerae O1 biovar El Tor str. N16961]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGAGTTTCAACCGCGACCGTGTCTCGTGCGTTGATGAATCCAGAGAA
AGTCTCGTCGTCCACTCGTAAACGAGTGGAAGAGGCCGTGCTGGAAGCGGGTTACTCACCCAATTCTTTGGCGCGCAATT
TGCGCCGTAATGAATCGAAAACCATCGTTGCTATCGTGCCAGATATCTGTGATCCCTACTTTTCTGAGATCATTCGCGGT
ATTGAAGATGCCGCGATGGAGCACGGTTATCTGGTGCTGTTGGGGGATAGTGGTCAACAGAAGCGTCGGGAGAACTCGTT
CGTTAATCTGGTGTTTACCAAACAGGCAGACGGTATGTTGCTGCTGGGGACAGATTTGCCGTTTGATGTGAGTAAACCTG
AGCAGAAAAACCTACCGCCTATGGTGATGGCGTGTGAATTTGCGCCAGAGCTGGAATTGCCAACGGTACACATTGATAAC
CTGACCTCGGCATTTGAGGCGGTAAACTATCTCACTCAGCTTGGGCACAAACGGATTGCGCAGATCTCAGGTCCACAACA
TGCTGCGCTGTGCCAATTCCGTCATCAAGGCTATCAACAGGCGTTGCGTCGTGCTGGCATCACCATGAACCCGACTTACT
GCACTTTTGGCGATTTCACTTTTGAAGCCGGGGCAAAAGCGGTGCGTCAGCTGTTGGCATTGCCTGAGCAGCCGACCGCG
ATTTTCTGTCATAACGATACGATGGCGATTGGCGCAATTCAGGAAGCGAAGCGACTTGGCTTGCGCGTACCGCAAGATCT
CTCTGTGGTCGGTTTTGACGATATTCAGTTTGCCCAGTACTGCGATCCCCCATTAACCACCATTTCGCAGCCGCGTTATG
AGATTGGCCGTCAAGCCATGCTGATGATGCTTGAGCTGCTTCGCGGACACGATGTACGTGCTGGATCGCGTCTTTTGGAG
ACCAAGCTGGTCGTGCGTGAGAGTGCTGCGCCGCCAAGCAAGAAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085RG68

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

100

100

1
  cytR Vibrio parahaemolyticus RIMD 2210633

90.719

99.701

0.904

Multiple sequence alignment