Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   FY484_RS02985 Genome accession   NZ_LT906614
Coordinates   591708..592226 (+) Length   172 a.a.
NCBI ID   WP_001130227.1    Uniprot ID   -
Organism   Vibrio cholerae O1 biovar El Tor str. N16961     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 586708..597226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY484_RS02975 - 587118..589973 (+) 2856 WP_001233047.1 M16 family metallopeptidase -
  FY484_RS02980 gshA 590085..591659 (+) 1575 WP_000032608.1 glutamate--cysteine ligase -
  FY484_RS02985 luxS 591708..592226 (+) 519 WP_001130227.1 S-ribosylhomocysteine lyase Regulator
  FY484_RS02990 - 592296..593576 (-) 1281 WP_000340990.1 HlyC/CorC family transporter -
  FY484_RS02995 - 593659..594453 (-) 795 WP_000369278.1 inner membrane protein YpjD -
  FY484_RS03000 ffh 594666..596051 (+) 1386 WP_000462720.1 signal recognition particle protein -
  FY484_RS03005 rpsP 596287..596535 (+) 249 WP_000256449.1 30S ribosomal protein S16 -
  FY484_RS03010 rimM 596563..597117 (+) 555 WP_000061906.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19080.90 Da        Isoelectric Point: 5.2199

>NTDB_id=1148146 FY484_RS02985 WP_001130227.1 591708..592226(+) (luxS) [Vibrio cholerae O1 biovar El Tor str. N16961]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSERGIHTLEHLYAGFMRNHLNGSQVEIIDISP
MGCRTGFYMSLIGAPTEQQVAQAWLAAMQDVLKVESQEQIPELNEYQCGTAAMHSLEEAKAIAKNVIAAGISVNRNDELA
LPESMLNELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1148146 FY484_RS02985 WP_001130227.1 591708..592226(+) (luxS) [Vibrio cholerae O1 biovar El Tor str. N16961]
ATGCCATTATTAGACAGTTTTACCGTCGATCATACTCGTATGAATGCACCGGCGGTGCGTGTTGCCAAAACCATGCAAAC
CCCAAAAGGGGATACGATTACCGTATTTGATTTGCGTTTTACTATGCCAAACAAAGATATCTTGTCTGAGCGCGGTATCC
ATACTCTAGAGCATCTCTACGCGGGCTTTATGCGCAATCACCTTAACGGCAGCCAAGTGGAGATCATCGATATTTCACCA
ATGGGTTGCCGTACAGGTTTCTACATGAGCTTGATTGGTGCGCCGACAGAACAGCAAGTGGCACAAGCATGGCTAGCCGC
AATGCAAGATGTGTTGAAAGTTGAAAGCCAAGAGCAAATTCCTGAGCTGAATGAGTACCAGTGCGGCACTGCGGCGATGC
ACTCGCTCGAAGAAGCCAAAGCGATTGCGAAAAACGTGATTGCGGCAGGCATCTCGGTTAACCGTAACGATGAGTTGGCG
CTGCCCGAATCTATGCTCAATGAGCTGAAGGTTCACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

100

100

1

Multiple sequence alignment