Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   CKW08_RS04915 Genome accession   NZ_LT906484
Coordinates   1023863..1024966 (+) Length   367 a.a.
NCBI ID   WP_023853086.1    Uniprot ID   A0AAI9J0F0
Organism   Bordetella pertussis strain NCTC13667     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1018863..1029966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKW08_RS04890 (SAMEA3643328_00976) - 1020740..1021126 (+) 387 WP_003808567.1 MOSC N-terminal beta barrel domain-containing protein -
  CKW08_RS04895 (SAMEA3643328_00977) - 1021134..1022267 (-) 1134 WP_010931494.1 benzoate/H(+) symporter BenE family transporter -
  CKW08_RS04900 (SAMEA3643328_00978) - 1022331..1022582 (-) 252 WP_003808570.1 YfhL family 4Fe-4S dicluster ferredoxin -
  CKW08_RS04905 (SAMEA3643328_00979) coaD 1022637..1023146 (-) 510 WP_003808574.1 pantetheine-phosphate adenylyltransferase -
  CKW08_RS04910 (SAMEA3643328_00980) rsmD 1023167..1023787 (-) 621 WP_003808577.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  CKW08_RS04915 (SAMEA3643328_00981) pilA 1023863..1024966 (+) 1104 WP_023853086.1 signal recognition particle-docking protein FtsY Machinery gene
  CKW08_RS04920 (SAMEA3643328_00982) - 1025013..1026611 (-) 1599 Protein_964 CYTH and CHAD domain-containing protein -
  CKW08_RS04925 (SAMEA3643328_00984) phnE 1026795..1027616 (-) 822 WP_010931496.1 phosphonate ABC transporter, permease protein PhnE -
  CKW08_RS04930 (SAMEA3643328_00985) phnE 1027613..1028482 (-) 870 WP_023998122.1 phosphonate ABC transporter, permease protein PhnE -
  CKW08_RS04935 (SAMEA3643328_00986) - 1028500..1028985 (-) 486 Protein_967 phosphonate ABC transporter ATP-binding protein -
  CKW08_RS04940 (SAMEA3643328_00987) - 1028979..1029929 (-) 951 WP_005013747.1 IS481-like element IS481 family transposase -

Sequence

Protein


Download         Length: 367 a.a.        Molecular weight: 38499.02 Da        Isoelectric Point: 6.5148

>NTDB_id=1148125 CKW08_RS04915 WP_023853086.1 1023863..1024966(+) (pilA) [Bordetella pertussis strain NCTC13667]
MFSFFKKKSPPPAAPAQPAPPPEAVDAGSAAPAQPQPAEPQPEPQPQQPPEPQPPVAAAPEAPRKASWLSRLKQGLSRTG
QNIGGLFVGVKVDENLFEELESALIMADAGIEATEKLLAALRARVKKERIDDPAQVKTALRQLLADHLRPLERSFDLGRA
QPLVVMIAGVNGAGKTTSIGKLAHTFQRQGASVLLAAGDTFRAAAREQLVEWGSRNNVTVISQDGGDPAAVAFDSVNAGR
ARNVGVVMVDTAGRLPTQLHLMEELKKIRRVIGKAEASAPHEVLLVVDGNTGQNALAQIRAFDAAITLTGLVVTKLDGTA
KGGTLAAVAAGSQGVRPIPVYWIGVGEGLEDLQPFVADEFAAALLAD

Nucleotide


Download         Length: 1104 bp        

>NTDB_id=1148125 CKW08_RS04915 WP_023853086.1 1023863..1024966(+) (pilA) [Bordetella pertussis strain NCTC13667]
ATGTTCAGCTTCTTCAAGAAAAAATCCCCTCCGCCCGCCGCGCCGGCCCAGCCCGCGCCGCCGCCGGAGGCAGTGGACGC
AGGGTCAGCCGCACCTGCGCAGCCTCAACCCGCCGAGCCGCAGCCCGAGCCGCAGCCGCAACAACCGCCCGAGCCGCAGC
CACCGGTCGCGGCCGCGCCCGAGGCGCCCCGCAAGGCCTCGTGGCTGAGCCGGCTCAAACAGGGCCTGTCGCGCACCGGC
CAGAACATCGGCGGGCTGTTCGTCGGCGTGAAGGTCGACGAGAACCTGTTCGAGGAACTGGAGTCGGCGCTGATCATGGC
CGACGCGGGCATCGAGGCCACCGAGAAACTGCTGGCCGCGCTGCGCGCGCGCGTCAAGAAAGAGCGCATCGACGATCCGG
CGCAGGTCAAGACGGCGCTGCGCCAATTGCTGGCCGACCATCTGCGGCCGCTGGAGCGGTCCTTCGACCTGGGGCGGGCC
CAGCCCCTGGTGGTCATGATCGCCGGCGTCAACGGCGCGGGCAAGACGACCTCGATCGGCAAGCTGGCGCATACCTTCCA
GCGCCAGGGCGCCAGCGTGCTGCTGGCGGCCGGGGACACCTTCCGCGCGGCGGCGCGCGAGCAATTGGTCGAATGGGGCA
GCCGCAACAATGTGACCGTGATCTCGCAGGATGGCGGCGATCCGGCCGCGGTGGCGTTCGACTCGGTCAATGCCGGACGT
GCGCGCAACGTGGGCGTGGTGATGGTGGATACGGCCGGCCGCCTGCCCACGCAGCTGCACCTGATGGAAGAATTGAAGAA
GATCCGCCGCGTCATCGGCAAGGCCGAGGCCAGCGCGCCGCATGAAGTGCTGCTGGTGGTCGATGGCAACACCGGCCAGA
ACGCGCTGGCGCAAATCCGCGCCTTCGACGCCGCCATCACCCTCACCGGCCTGGTCGTCACCAAGCTGGACGGCACCGCC
AAGGGCGGCACGCTGGCGGCCGTGGCCGCCGGCAGCCAGGGCGTGCGGCCCATCCCGGTCTATTGGATCGGCGTGGGCGA
GGGGTTGGAGGACCTGCAGCCCTTCGTGGCCGACGAGTTCGCCGCCGCCCTGCTGGCCGACTGA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(163-365)

SRP54-type protein, helical bundle domain (SRP54_N)

(83-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

53.913

94.005

0.507

Multiple sequence alignment