Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   CKV94_RS07095 Genome accession   NZ_LT906482
Coordinates   1404881..1406323 (+) Length   480 a.a.
NCBI ID   WP_003824089.1    Uniprot ID   -
Organism   Eikenella corrodens strain NCTC10596     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1399881..1411323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV94_RS07070 (SAMEA4412678_01385) - 1400512..1402020 (+) 1509 WP_003824082.1 hypothetical protein -
  CKV94_RS07075 (SAMEA4412678_01386) - 1402024..1403151 (+) 1128 WP_003824083.1 hypothetical protein -
  CKV94_RS07080 (SAMEA4412678_01387) - 1403163..1403699 (+) 537 WP_003824085.1 ATP/GTP-binding protein -
  CKV94_RS07085 (SAMEA4412678_01388) - 1403702..1404361 (+) 660 WP_003824087.1 roadblock/LC7 domain-containing protein -
  CKV94_RS07090 (SAMEA4412678_01389) - 1404385..1404753 (+) 369 WP_003824088.1 roadblock/LC7 domain-containing protein -
  CKV94_RS07095 (SAMEA4412678_01390) pilA 1404881..1406323 (+) 1443 WP_003824089.1 signal recognition particle-docking protein FtsY Machinery gene
  CKV94_RS07100 (SAMEA4412678_01391) recN 1406433..1408097 (+) 1665 WP_035580774.1 DNA repair protein RecN -
  CKV94_RS07105 (SAMEA4412678_01392) aroA 1408373..1409665 (+) 1293 WP_035580777.1 3-phosphoshikimate 1-carboxyvinyltransferase -
  CKV94_RS07110 (SAMEA4412678_01393) - 1409885..1410655 (-) 771 WP_003824096.1 TatD family hydrolase -
  CKV94_RS07115 (SAMEA4412678_01394) - 1410658..1411017 (-) 360 WP_003824098.1 PilZ domain-containing protein -

Sequence

Protein


Download         Length: 480 a.a.        Molecular weight: 51001.57 Da        Isoelectric Point: 4.2818

>NTDB_id=1148107 CKV94_RS07095 WP_003824089.1 1404881..1406323(+) (pilA) [Eikenella corrodens strain NCTC10596]
MVFGFFRKRKAQPTSPQQEAELVQAVEEAVQTEEVAMQSTSETAEQATAQTPAAEIAVTELELTDLATEISAHELASIEE
ADAEVLPAQPEVLAEQSLVETQADKITDAVPTVEVVEQVAGETSVVTAEAAASIDEHDSDAQAGNEPAFSEQTAAESVAP
SSTDIHKAAVEPVSEQPTLLGWAARLKQGLSKSRQQMAKSLAGVFGGGKIDEDLYEELETVLLTSDMGIEATEHLMEEVR
QRVSLRGLKDGEELRGALKEAIYELIKPLEQPLALPADKRPFVIMLAGINGAGKTTSIGKLAKYFQAQGKSVLLAAGDTF
RAAAREQLAEWGERNGVTVISQASGDSAAVCFDAVEAAKARGIDIVLADTAGRLPTQTHLMEEIKKVKRVLQKSMPDAPH
EIVVVLDANIGQNAVNQVIAFDDALGLTGLIVTKLDGTAKGGVLAALASRRPVPVRFIGVGEGIDDLRPFNAREFVDALL

Nucleotide


Download         Length: 1443 bp        

>NTDB_id=1148107 CKV94_RS07095 WP_003824089.1 1404881..1406323(+) (pilA) [Eikenella corrodens strain NCTC10596]
ATGGTTTTTGGATTTTTTAGAAAGCGCAAAGCGCAACCCACATCCCCGCAACAGGAAGCCGAGTTGGTACAGGCGGTTGA
AGAAGCAGTGCAAACCGAAGAGGTTGCGATGCAATCTACATCAGAAACAGCAGAGCAAGCTACTGCCCAAACGCCTGCTG
CTGAAATTGCTGTGACTGAGTTGGAGTTGACTGATTTAGCTACCGAAATATCGGCACACGAGCTCGCAAGCATAGAAGAA
GCAGATGCTGAAGTATTGCCCGCACAACCGGAAGTTTTGGCTGAACAATCTCTTGTTGAAACACAAGCAGATAAAATCAC
TGATGCCGTGCCGACTGTAGAAGTAGTAGAGCAAGTAGCGGGCGAAACATCTGTTGTTACAGCTGAAGCAGCTGCTTCGA
TTGATGAACACGACTCTGATGCTCAGGCAGGCAACGAGCCAGCATTCAGTGAGCAGACAGCGGCAGAATCAGTTGCTCCA
TCAAGTACCGACATCCATAAAGCCGCTGTCGAGCCAGTTTCAGAGCAGCCAACCTTGCTTGGCTGGGCTGCCCGCCTCAA
GCAAGGCTTGAGCAAATCGCGCCAGCAGATGGCCAAATCGCTGGCCGGCGTGTTTGGCGGTGGCAAGATAGACGAAGACC
TGTATGAAGAGCTGGAAACCGTGCTGCTCACCAGCGATATGGGCATCGAAGCCACCGAGCATCTGATGGAAGAAGTGCGC
CAACGCGTGAGCCTGCGCGGCCTGAAAGACGGCGAAGAACTGCGCGGCGCATTGAAAGAAGCCATCTACGAGCTGATTAA
ACCGCTGGAACAACCGCTGGCCTTGCCCGCAGACAAACGGCCGTTTGTGATTATGCTCGCCGGCATCAACGGCGCGGGCA
AAACCACTTCTATCGGCAAGTTAGCCAAATATTTCCAAGCTCAGGGCAAAAGCGTGCTGCTGGCCGCCGGCGATACTTTC
CGCGCCGCTGCCCGCGAGCAACTGGCCGAATGGGGCGAGCGCAACGGCGTTACCGTGATTTCCCAAGCTTCCGGCGATTC
TGCCGCCGTCTGTTTCGATGCCGTGGAAGCCGCCAAAGCGCGCGGTATTGACATCGTGCTGGCCGACACCGCCGGTCGCC
TGCCCACGCAAACCCATTTGATGGAAGAAATCAAAAAAGTGAAGCGCGTGTTGCAAAAATCCATGCCCGACGCGCCGCAT
GAAATCGTGGTGGTGCTGGATGCCAATATCGGCCAGAATGCTGTGAACCAAGTGATTGCCTTCGATGACGCTCTGGGGCT
CACCGGCCTCATCGTCACCAAGCTCGACGGCACGGCCAAAGGCGGCGTGCTGGCTGCGCTGGCCAGCCGCCGCCCCGTGC
CGGTGCGCTTTATCGGCGTGGGCGAGGGCATCGACGACTTGCGCCCGTTTAACGCCCGCGAGTTTGTAGACGCACTGCTG
TAA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(281-480)

SRP54-type protein, helical bundle domain (SRP54_N)

(197-261)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

73.316

80.417

0.59

Multiple sequence alignment