Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   CKV94_RS04195 Genome accession   NZ_LT906482
Coordinates   833495..836740 (+) Length   1081 a.a.
NCBI ID   WP_003824750.1    Uniprot ID   -
Organism   Eikenella corrodens strain NCTC10596     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 828495..841740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV94_RS04160 (SAMEA4412678_00829) - 829074..830927 (-) 1854 WP_003824743.1 PglL family O-oligosaccharyltransferase -
  CKV94_RS04165 (SAMEA4412678_00830) - 830924..831271 (-) 348 WP_371125766.1 DUF2069 domain-containing protein -
  CKV94_RS04170 (SAMEA4412678_00831) tatC 831425..832174 (-) 750 WP_003824745.1 twin-arginine translocase subunit TatC -
  CKV94_RS04175 (SAMEA4412678_00832) tatB 832171..832647 (-) 477 WP_003824746.1 Sec-independent protein translocase protein TatB -
  CKV94_RS04180 (SAMEA4412678_00833) tatA 832651..832860 (-) 210 WP_035581206.1 Sec-independent protein translocase subunit TatA -
  CKV94_RS04185 - 832897..833106 (+) 210 WP_003824749.1 hypothetical protein -
  CKV94_RS11345 - 833278..833384 (+) 107 Protein_814 IS5/IS1182 family transposase -
  CKV94_RS04195 (SAMEA4412678_00834) recC 833495..836740 (+) 3246 WP_003824750.1 exodeoxyribonuclease V subunit gamma Machinery gene
  CKV94_RS04210 (SAMEA4412678_00837) dusA 837188..838189 (+) 1002 WP_035581209.1 tRNA dihydrouridine(20/20a) synthase DusA -
  CKV94_RS04215 (SAMEA4412678_00838) yccS 838350..840545 (-) 2196 WP_003824752.1 YccS family putative transporter -

Sequence

Protein


Download         Length: 1081 a.a.        Molecular weight: 120475.34 Da        Isoelectric Point: 6.1883

>NTDB_id=1148103 CKV94_RS04195 WP_003824750.1 833495..836740(+) (recC) [Eikenella corrodens strain NCTC10596]
MLHLYSSNRLEFLAETAVALMWTTPLKAVLAPEEIVVQSQGMRRYLNHYLAERSGIAANLNFSLPAALSWQLTRRFLPDA
PRLNPFAPEVLRWRLLSLLENADSALPAVLQGYLKSSTAAAYHLAGRLADVFDQYLVYRPHWLAQWEQGKLNGLGADEAW
QAALWRTLAADTPVAHRAAQHERLLAALNPARLPQRYLAFGISTLAPVYLDLLQALAEHTDVHLFAVNPSQQYWGDIQSP
KRLAAQAEPAAEEAGHPLLSSLGKQGRDFFDRLAVSTRAMEQVELFPAPSESPSLLQHLQADIQLLRLPEKGSAQMDGSI
VIQAAHSPLRELQILKEHLLRRLADNPELQPHHIAVLTPAVEDYLPFIHAVFGEAAPGSRALPYSVADVRLSRSQPLMLL
AEQLIALMQSRFETERLLPLLDAQAVRRHWQIDETDAEFLRRSVAELNVHWGADAEMRAEHSGSGKVFTWQQATERSVLG
WLLPEGEGTLWQGVHPWPADFARQPAQAAWFVLLGKLREHHRRWQSPASIEGWIERFRALLADAAGDTPDEADQAAWQQI
SQALAAWQEEAALAGYTAALPPDNACQHLRRFFGQSSEAAFLRGGITFCSMVPMRSLPFDTVCLLGLNDGKYPRQTPAPA
FDLIARHPQSGDRSRRDDDRYLFLESLLSARSHLYLSYIGRDHLKDEAQAPSPLLSELIDTLAQMAGQSSADFAAAHVRQ
HPLQAFSTRYFVPQQDGESSAELSENGLSGSLSGLRQDYAQALNQPAAEAAPFIGDTLPEAAGEPTVSLDSFLNFWSNPV
RHWLRRALQWKGPYADRPADSAEPYAIEHTDEVKQRYLDARRHREDFAQTEAKLQADSLLPAGLLGEILQEPERTAAKQL
DSELLASPREPDFPFRFEYGGHTLVGSLTHLHQHGQIFYHAAELKAPAEIRLWLQHLVYCAVHPKAQATHLVSLDSPQTL
PPLPQTEAAEQLARWLDYYLLGQQQPLPFFPRTSLAAAKACTAKDLSAQGLPEAALKAARSKYRDSRDYPGQNQDREVAQ
VYGRDEDEPINSPLFARLVLELLAPLHLCIAPKESKGKKAG

Nucleotide


Download         Length: 3246 bp        

>NTDB_id=1148103 CKV94_RS04195 WP_003824750.1 833495..836740(+) (recC) [Eikenella corrodens strain NCTC10596]
ATGCTCCACCTTTATTCTTCCAACCGCCTAGAATTCCTTGCCGAAACCGCCGTTGCGCTGATGTGGACTACGCCGCTGAA
AGCGGTGTTGGCGCCGGAAGAAATCGTGGTGCAGAGCCAGGGGATGCGCCGTTATCTCAATCATTATTTAGCCGAGCGCA
GCGGCATTGCGGCCAATTTGAATTTCAGCCTGCCTGCAGCCCTGAGCTGGCAGCTCACGCGCCGCTTCCTGCCCGATGCG
CCGCGCCTGAACCCGTTTGCGCCGGAAGTGTTGCGCTGGCGGCTGCTGTCGCTGTTGGAAAATGCCGATTCGGCTCTGCC
GGCCGTATTGCAGGGCTACCTGAAAAGCAGCACGGCGGCGGCCTATCATTTGGCGGGGCGGCTGGCAGACGTGTTCGACC
AATATTTGGTGTACCGCCCGCATTGGCTCGCGCAATGGGAGCAGGGCAAGCTCAACGGCTTGGGCGCAGATGAAGCCTGG
CAGGCCGCGTTGTGGCGCACGCTCGCCGCCGACACCCCCGTCGCCCACCGTGCCGCGCAGCACGAACGGCTGCTGGCCGC
GCTGAATCCGGCGCGCCTGCCGCAGCGTTATTTGGCGTTCGGCATTTCCACACTGGCGCCGGTGTATCTGGATTTGTTGC
AGGCCTTGGCCGAACACACCGATGTGCACCTGTTTGCGGTCAACCCCAGCCAACAATACTGGGGCGACATCCAAAGCCCG
AAACGGCTGGCCGCACAGGCCGAACCCGCAGCCGAAGAAGCCGGCCACCCGCTGCTCTCCTCGCTGGGCAAACAGGGGCG
CGACTTTTTCGACCGCCTGGCCGTGAGCACCCGCGCCATGGAGCAGGTGGAACTCTTCCCCGCGCCGTCCGAATCGCCCA
GCCTGCTGCAACACCTGCAGGCCGACATCCAGCTGTTGAGGCTACCTGAAAAAGGCAGCGCGCAGATGGACGGCAGCATC
GTGATCCAAGCCGCCCACAGCCCCCTGCGCGAGCTGCAAATCCTCAAAGAACACCTGTTGCGCCGTTTGGCGGACAACCC
CGAGCTCCAGCCGCACCACATCGCCGTGCTCACCCCCGCCGTTGAAGACTACCTGCCCTTCATTCACGCCGTGTTCGGCG
AAGCCGCGCCCGGCAGCCGCGCCCTGCCGTATTCCGTGGCCGACGTGCGCCTCAGCCGCAGCCAGCCTTTGATGCTGCTG
GCCGAGCAGCTCATCGCCCTGATGCAGAGCCGATTCGAAACCGAACGCCTGCTGCCCCTGCTCGATGCCCAAGCGGTGCG
CCGCCATTGGCAGATTGATGAAACCGATGCCGAATTCCTGCGCCGCAGCGTGGCCGAACTCAACGTGCATTGGGGCGCGG
ATGCCGAAATGCGCGCCGAGCACAGCGGCAGCGGCAAAGTCTTCACTTGGCAGCAGGCCACAGAACGCAGCGTGCTGGGC
TGGCTGCTGCCCGAGGGCGAAGGTACGTTGTGGCAGGGAGTGCACCCCTGGCCGGCTGATTTTGCCCGCCAGCCTGCCCA
GGCCGCCTGGTTTGTGCTGCTGGGCAAGTTGCGCGAGCACCACCGCCGCTGGCAAAGCCCCGCATCCATCGAAGGCTGGA
TCGAACGTTTCCGCGCCCTCTTGGCCGATGCCGCGGGCGACACCCCCGACGAAGCCGACCAAGCCGCCTGGCAGCAAATC
AGCCAGGCCTTGGCCGCCTGGCAGGAAGAAGCTGCGCTGGCGGGCTATACCGCAGCCCTGCCGCCCGACAACGCCTGCCA
GCACCTGCGCCGCTTCTTCGGCCAAAGCAGCGAAGCCGCCTTTTTGCGCGGCGGCATCACCTTCTGCAGCATGGTGCCCA
TGCGCAGCCTGCCGTTCGATACCGTGTGCCTGCTCGGCCTGAACGACGGCAAATACCCGCGCCAAACCCCCGCCCCCGCC
TTCGACCTCATCGCCCGCCACCCCCAATCCGGCGACCGTTCCCGCCGCGACGACGACCGCTACCTGTTCCTCGAATCCCT
GCTCAGCGCCCGCAGCCACCTTTATCTTTCCTACATCGGCCGCGACCACCTCAAAGACGAAGCCCAAGCCCCCTCGCCGC
TGTTGAGCGAACTCATCGACACGCTGGCGCAAATGGCCGGCCAAAGCAGCGCCGATTTCGCCGCCGCCCACGTGCGCCAA
CACCCCCTGCAAGCCTTTTCCACCCGCTACTTTGTCCCGCAACAGGATGGGGAAAGTTCAGCCGAACTTAGCGAAAACGG
GCTTTCAGGTAGCCTATCCGGCCTCCGCCAAGACTATGCCCAAGCCCTCAACCAACCCGCCGCCGAAGCCGCGCCCTTTA
TCGGCGATACCCTGCCTGAAGCTGCAGGCGAACCCACCGTATCGCTCGACAGTTTCCTAAACTTCTGGAGCAACCCCGTG
CGCCATTGGCTACGCCGTGCCCTGCAATGGAAAGGCCCCTATGCCGACCGCCCTGCCGATTCTGCCGAGCCCTACGCCAT
CGAACACACCGACGAAGTGAAACAGCGCTACCTCGACGCCCGACGCCACCGCGAAGACTTCGCCCAAACCGAAGCCAAAC
TGCAGGCCGACAGCCTCCTGCCCGCCGGCCTGCTCGGCGAAATCCTGCAAGAGCCCGAGCGCACCGCCGCCAAGCAGCTC
GATTCCGAACTGCTCGCCAGCCCGCGCGAGCCCGACTTCCCCTTCCGTTTCGAGTACGGCGGCCACACCCTCGTCGGCAG
CCTCACCCACCTGCACCAACACGGCCAAATCTTCTACCACGCCGCCGAACTCAAAGCCCCCGCCGAAATTAGGCTGTGGC
TGCAACACCTGGTGTATTGCGCCGTTCACCCCAAAGCACAAGCCACCCACCTCGTCTCTCTCGACAGCCCGCAAACCCTG
CCGCCGCTGCCGCAAACGGAAGCCGCCGAGCAACTTGCCCGCTGGCTCGACTACTACCTGCTCGGCCAACAACAGCCGCT
GCCCTTCTTCCCCCGCACCAGCCTGGCCGCCGCCAAAGCCTGCACCGCCAAAGACCTCTCTGCCCAAGGGCTACCTGAAG
CAGCCCTCAAAGCTGCCCGCAGTAAATACCGCGATAGCCGCGACTACCCCGGCCAAAACCAAGATCGCGAAGTCGCCCAA
GTGTACGGCCGTGATGAAGACGAGCCAATTAACAGTCCCCTGTTCGCCCGCCTCGTTTTAGAGCTGCTCGCCCCGCTGCA
TTTATGCATCGCGCCCAAAGAGAGCAAAGGCAAAAAAGCTGGTTAA

Domains

Predicted by InterproScan.

RecC C-terminal domain (RecC_C)

(785-1001)

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(2-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

47.878

100

0.48

Multiple sequence alignment