Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   V529_RS01680 Genome accession   NZ_CP006890
Coordinates   322502..322939 (-) Length   145 a.a.
NCBI ID   WP_038456921.1    Uniprot ID   -
Organism   Bacillus velezensis SQR9     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 317502..327939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V529_RS01655 (V529_03180) - 318681..319883 (+) 1203 WP_038456918.1 GTP-binding protein -
  V529_RS01660 (V529_03190) - 319948..321084 (+) 1137 WP_007609290.1 zinc-dependent alcohol dehydrogenase -
  V529_RS01665 (V529_03200) - 321099..321533 (+) 435 WP_021494203.1 RDD family protein -
  V529_RS01670 (V529_03210) - 321605..321928 (+) 324 WP_007409357.1 YckD family protein -
  V529_RS01675 (V529_03220) nin/comJ 322083..322481 (-) 399 WP_038456919.1 competence protein ComJ Regulator
  V529_RS01680 (V529_03230) nucA/comI 322502..322939 (-) 438 WP_038456921.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  V529_RS01685 (V529_03240) hxlB 323296..323853 (-) 558 WP_038456922.1 6-phospho-3-hexuloisomerase -
  V529_RS01690 (V529_03250) hxlA 323850..324485 (-) 636 WP_014416875.1 3-hexulose-6-phosphate synthase -
  V529_RS01695 (V529_03260) - 324717..325079 (+) 363 WP_007409352.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16099.38 Da        Isoelectric Point: 8.4850

>NTDB_id=114810 V529_RS01680 WP_038456921.1 322502..322939(-) (nucA/comI) [Bacillus velezensis SQR9]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKNDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=114810 V529_RS01680 WP_038456921.1 322502..322939(-) (nucA/comI) [Bacillus velezensis SQR9]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAATGATTACGACAAGGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCATGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATTAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment