Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   CKV94_RS00990 Genome accession   NZ_LT906482
Coordinates   189775..191478 (-) Length   567 a.a.
NCBI ID   WP_035580417.1    Uniprot ID   -
Organism   Eikenella corrodens strain NCTC10596     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 184775..196478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV94_RS00965 (SAMEA4412678_00193) - 184868..185842 (-) 975 WP_003823147.1 YheT family hydrolase -
  CKV94_RS00970 (SAMEA4412678_00194) - 186110..186394 (+) 285 WP_003823148.1 hypothetical protein -
  CKV94_RS00975 (SAMEA4412678_00195) murA 186516..187769 (-) 1254 WP_003823149.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  CKV94_RS00980 (SAMEA4412678_00196) pheA 188086..189165 (+) 1080 WP_035580142.1 prephenate dehydratase -
  CKV94_RS00985 (SAMEA4412678_00197) - 189305..189709 (+) 405 WP_035580144.1 DUF6636 domain-containing protein -
  CKV94_RS00990 (SAMEA4412678_00198) recD 189775..191478 (-) 1704 WP_035580417.1 exodeoxyribonuclease V subunit alpha Machinery gene
  CKV94_RS01000 (SAMEA4412678_00199) leuC 191899..193308 (+) 1410 WP_003823159.1 3-isopropylmalate dehydratase large subunit -
  CKV94_RS01005 (SAMEA4412678_00200) - 193441..193848 (+) 408 WP_003823163.1 hypothetical protein -
  CKV94_RS01010 (SAMEA4412678_00201) - 193912..194541 (+) 630 WP_223417331.1 hypothetical protein -
  CKV94_RS01015 (SAMEA4412678_00202) - 194693..194881 (+) 189 WP_023886792.1 hypothetical protein -
  CKV94_RS01020 (SAMEA4412678_00203) leuD 194988..195629 (+) 642 WP_003823166.1 3-isopropylmalate dehydratase small subunit -
  CKV94_RS01025 (SAMEA4412678_00204) - 195719..196048 (+) 330 WP_003823167.1 hypothetical protein -
  CKV94_RS01030 (SAMEA4412678_00205) - 196113..196475 (+) 363 WP_003823168.1 TIGR02328 family protein -

Sequence

Protein


Download         Length: 567 a.a.        Molecular weight: 61400.30 Da        Isoelectric Point: 7.4019

>NTDB_id=1148092 CKV94_RS00990 WP_035580417.1 189775..191478(-) (recD) [Eikenella corrodens strain NCTC10596]
MIEYRYPAAQAAAEVLQRLAPQTAEPVLPLLDELFAAQEGGHSYITLAPQEAEALRQAAPVVGDGGAFTPLVLRGRRLFS
GRLFALERSVAAELQRIAHNRVRLPENAGLRQRLRDWFPDAGHNGQRLAAALAVLQPLMLVTGGPGTGKTTTVAKLLALL
CADAVEMPRIALTAPTGKAAAHMTRSLHRALSSFKVGSEQVLQHLTVLEGQTVHRLLKLNPVVGYSKFNREQPLPFDIVV
ADEASMLDLPLLHQLLCAIPEHGRLILLGDENQLPPVGIGAVLPVLAQPTVLTAKEAAQLAEWLPEGVPFEVRDNPPPLA
GNVARLEYSHRFDPQRGVGALAQAVVNGEAAAAEAAFARFTDDLFRLPETPAALARHFTKQYEAYWQAVNSGDPAACFSA
QQQLVVLAARRSQAAEFNREYRKLLAAQGRAAEQGWFAGQVLMVAENDYAVNVFNGDIGIVLPHGDGLAAFFPDAGGFRA
VSLSRLPAHDTAFAMTVHKSQGSEYQEVWLLGDEADSALFDRTLLYTAITRARRRFGYAGQMSALIAAVQRKNHRRTGLG
EALQSLK

Nucleotide


Download         Length: 1704 bp        

>NTDB_id=1148092 CKV94_RS00990 WP_035580417.1 189775..191478(-) (recD) [Eikenella corrodens strain NCTC10596]
ATGATCGAATACCGTTACCCCGCCGCCCAAGCTGCTGCCGAAGTGTTGCAGCGTTTGGCACCGCAGACCGCCGAGCCGGT
GCTGCCGCTGTTGGACGAACTGTTTGCCGCGCAAGAGGGCGGCCACAGCTACATCACGCTCGCGCCGCAAGAGGCGGAGG
CGTTGCGGCAGGCCGCGCCGGTGGTGGGCGATGGCGGCGCGTTCACGCCTTTGGTGTTGCGCGGGCGGCGGCTGTTTAGT
GGCAGGCTGTTTGCACTAGAGCGCAGCGTGGCCGCCGAATTACAACGGATTGCCCATAATCGGGTGAGGCTACCTGAAAA
CGCCGGGCTGCGGCAACGGTTGCGCGATTGGTTTCCCGATGCCGGGCATAACGGGCAGCGGCTGGCTGCCGCGCTGGCGG
TGTTGCAGCCGCTGATGCTGGTAACTGGCGGGCCGGGCACGGGCAAAACCACCACGGTGGCTAAGCTGCTGGCGCTGCTG
TGTGCCGATGCGGTCGAGATGCCGCGCATCGCGCTCACCGCCCCCACCGGCAAGGCTGCCGCCCACATGACCCGTTCGCT
GCACCGTGCGTTGAGTAGCTTTAAGGTGGGTAGCGAACAGGTGTTGCAGCATTTGACAGTATTGGAAGGACAAACTGTCC
ACCGGTTGCTGAAGCTGAACCCAGTAGTCGGCTATTCGAAATTTAACCGTGAGCAGCCGCTGCCTTTTGATATTGTGGTG
GCCGACGAGGCTTCCATGCTGGATTTGCCGCTGCTGCACCAATTATTGTGCGCCATTCCCGAGCATGGCCGCCTGATTTT
GTTGGGCGATGAAAACCAGCTGCCACCAGTGGGCATCGGTGCTGTATTGCCCGTGCTGGCGCAGCCCACCGTGCTCACGG
CTAAAGAAGCTGCCCAGTTGGCCGAGTGGCTGCCCGAAGGCGTGCCGTTTGAAGTGCGGGATAACCCGCCGCCCTTGGCC
GGCAACGTGGCGCGGTTGGAATACAGCCACCGTTTCGATCCGCAGCGCGGCGTGGGCGCATTGGCACAGGCCGTGGTGAA
CGGGGAGGCTGCCGCCGCCGAAGCCGCGTTTGCCCGCTTTACCGACGACTTGTTCAGGCTACCTGAAACCCCCGCCGCCT
TGGCGCGGCACTTTACCAAACAGTACGAGGCCTACTGGCAGGCGGTAAACAGCGGCGACCCGGCGGCCTGCTTTTCCGCC
CAGCAGCAGTTGGTGGTGCTGGCCGCACGGCGCAGCCAGGCGGCAGAGTTCAACCGCGAATACCGCAAGCTCCTGGCCGC
GCAGGGTAGGGCGGCGGAACAGGGCTGGTTTGCCGGGCAGGTGCTGATGGTGGCGGAAAACGATTATGCCGTGAACGTGT
TTAACGGCGACATTGGCATCGTGCTGCCGCACGGCGACGGGCTGGCTGCGTTTTTCCCCGATGCCGGCGGCTTCCGCGCC
GTATCGCTCAGCCGGCTGCCCGCGCACGATACCGCCTTCGCCATGACCGTACACAAAAGCCAAGGCTCGGAATACCAGGA
AGTGTGGCTCTTGGGCGACGAGGCCGACTCCGCCCTGTTCGACCGCACCCTGCTCTACACCGCCATCACCCGCGCCCGCC
GTCGCTTCGGCTACGCCGGCCAGATGAGTGCCCTTATTGCCGCCGTGCAACGCAAAAACCACCGCCGTACCGGTTTGGGC
GAGGCATTGCAATCGCTAAAGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_19)

(126-278)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(492-534)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

49.911

98.942

0.494

Multiple sequence alignment