Detailed information
Bioinformatically predicted
Overview
| Name | rocC | Type | Regulator |
| Locus tag | CKV96_RS00685 | Genome accession | NZ_LT906476 |
| Coordinates | 151584..152276 (+) | Length | 230 a.a. |
| NCBI ID | WP_014843076.1 | Uniprot ID | - |
| Organism | Legionella pneumophila strain NCTC11286 | ||
| Function | rocR chaperone; repress natural transformation (predicted from homology) Competence regulation |
||
Genomic Context
Location: 146584..157276
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CKV96_RS00665 (SAMEA4040027_00129) | - | 147205..147381 (-) | 177 | WP_011945326.1 | dodecin domain-containing protein | - |
| CKV96_RS00670 (SAMEA4040027_00130) | - | 147559..150027 (+) | 2469 | WP_014843073.1 | hypothetical protein | - |
| CKV96_RS00675 (SAMEA4040027_00131) | dapB | 150131..150862 (-) | 732 | WP_014843074.1 | 4-hydroxy-tetrahydrodipicolinate reductase | - |
| CKV96_RS00680 | - | 151042..151227 (-) | 186 | WP_014843075.1 | hypothetical protein | - |
| CKV96_RS00685 (SAMEA4040027_00132) | rocC | 151584..152276 (+) | 693 | WP_014843076.1 | ProQ/FinO family protein | Regulator |
| CKV96_RS00690 (SAMEA4040027_00133) | - | 152277..153344 (+) | 1068 | WP_014843077.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 230 a.a. Molecular weight: 25801.66 Da Isoelectric Point: 10.6432
>NTDB_id=1147947 CKV96_RS00685 WP_014843076.1 151584..152276(+) (rocC) [Legionella pneumophila strain NCTC11286]
MRKQALHPRTAVINKAQKNQSKRARSDALSWLAANFPEAFDNSLRIRPLKIGIMSDILQHAEKAEQVGISKSKLREAVVL
FTRRLDYLACLKAREVRIDLHGNPVEEVTEEEAEHASMKIKKRVEKSVKNARKLVNAKAANHSHVNNQPSTVSSVKPMNS
FDSHPEPLLPIYPLRSSTYASQNVAMQSAKSPSVVVKHKAPKQYDPDAVARLKEKLGLSRKAEDKKETTE
MRKQALHPRTAVINKAQKNQSKRARSDALSWLAANFPEAFDNSLRIRPLKIGIMSDILQHAEKAEQVGISKSKLREAVVL
FTRRLDYLACLKAREVRIDLHGNPVEEVTEEEAEHASMKIKKRVEKSVKNARKLVNAKAANHSHVNNQPSTVSSVKPMNS
FDSHPEPLLPIYPLRSSTYASQNVAMQSAKSPSVVVKHKAPKQYDPDAVARLKEKLGLSRKAEDKKETTE
Nucleotide
Download Length: 693 bp
>NTDB_id=1147947 CKV96_RS00685 WP_014843076.1 151584..152276(+) (rocC) [Legionella pneumophila strain NCTC11286]
ATGAGAAAGCAGGCGCTGCACCCACGAACCGCTGTCATCAATAAAGCACAAAAAAATCAATCCAAGCGTGCGCGATCTGA
CGCATTATCATGGCTTGCGGCTAATTTCCCTGAGGCATTCGATAATTCTTTGCGTATTCGGCCATTAAAGATTGGTATTA
TGTCTGATATATTGCAGCATGCAGAAAAAGCAGAGCAAGTTGGAATTTCTAAAAGTAAATTAAGGGAAGCTGTTGTTCTT
TTTACCCGTCGTCTTGATTATCTGGCTTGCCTGAAAGCTCGTGAAGTCCGTATCGATTTGCACGGAAATCCAGTAGAGGA
GGTTACTGAGGAAGAAGCGGAACATGCTTCCATGAAAATTAAAAAACGCGTGGAAAAGAGTGTTAAAAATGCTCGCAAAC
TAGTGAATGCAAAAGCGGCTAATCATTCGCATGTAAATAATCAGCCAAGTACAGTTTCCAGCGTTAAGCCAATGAATTCG
TTTGACTCTCATCCTGAGCCTCTTTTGCCAATATATCCTCTCAGAAGCTCTACCTATGCCTCACAAAATGTGGCAATGCA
ATCCGCCAAGTCACCATCCGTAGTAGTCAAACATAAAGCACCAAAGCAATATGATCCGGATGCTGTAGCCCGTTTAAAAG
AAAAATTAGGATTGTCTCGAAAAGCAGAAGATAAAAAGGAAACAACAGAGTAA
ATGAGAAAGCAGGCGCTGCACCCACGAACCGCTGTCATCAATAAAGCACAAAAAAATCAATCCAAGCGTGCGCGATCTGA
CGCATTATCATGGCTTGCGGCTAATTTCCCTGAGGCATTCGATAATTCTTTGCGTATTCGGCCATTAAAGATTGGTATTA
TGTCTGATATATTGCAGCATGCAGAAAAAGCAGAGCAAGTTGGAATTTCTAAAAGTAAATTAAGGGAAGCTGTTGTTCTT
TTTACCCGTCGTCTTGATTATCTGGCTTGCCTGAAAGCTCGTGAAGTCCGTATCGATTTGCACGGAAATCCAGTAGAGGA
GGTTACTGAGGAAGAAGCGGAACATGCTTCCATGAAAATTAAAAAACGCGTGGAAAAGAGTGTTAAAAATGCTCGCAAAC
TAGTGAATGCAAAAGCGGCTAATCATTCGCATGTAAATAATCAGCCAAGTACAGTTTCCAGCGTTAAGCCAATGAATTCG
TTTGACTCTCATCCTGAGCCTCTTTTGCCAATATATCCTCTCAGAAGCTCTACCTATGCCTCACAAAATGTGGCAATGCA
ATCCGCCAAGTCACCATCCGTAGTAGTCAAACATAAAGCACCAAAGCAATATGATCCGGATGCTGTAGCCCGTTTAAAAG
AAAAATTAGGATTGTCTCGAAAAGCAGAAGATAAAAAGGAAACAACAGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rocC | Legionella pneumophila str. Paris |
97.391 |
100 |
0.974 |