Detailed information NTG1147815

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: CKW03_RS00665
• Genome accession: NZ_LT906468
• Coordinates: 145838..147226 (+)
• Length: 462 a.a.
• NCBI ID: WP_093100166.1
• Uniprot ID: -
• Organism: Sphingobacterium mizutaii strain NCTC12149
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 140838..152226

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CKW03_RS00640 (SAMEA4412673_00132)	-	141297..143294 (+)	1998	WP_093100160.1	sensor histidine kinase	-
CKW03_RS00645 (SAMEA4412673_00133)	-	143394..143867 (+)	474	WP_093100161.1	DUF4293 domain-containing protein	-
CKW03_RS00650 (SAMEA4412673_00134)	-	143877..144350 (+)	474	WP_093100163.1	hypothetical protein	-
CKW03_RS00655 (SAMEA4412673_00135)	-	144633..145262 (-)	630	WP_093100164.1	hypothetical protein	-
CKW03_RS00660 (SAMEA4412673_00136)	-	145262..145768 (-)	507	WP_093100165.1	RNA polymerase sigma factor	-
CKW03_RS00665 (SAMEA4412673_00137)	radA	145838..147226 (+)	1389	WP_093100166.1	DNA repair protein RadA	Machinery gene
CKW03_RS00670 (SAMEA4412673_00138)	-	147288..148415 (-)	1128	WP_093100202.1	TlpA disulfide reductase family protein	-
CKW03_RS00675 (SAMEA4412673_00139)	-	148460..149287 (-)	828	WP_093100168.1	TPM domain-containing protein	-
CKW03_RS00680 (SAMEA4412673_00140)	-	149292..149726 (-)	435	WP_093100169.1	TPM domain-containing protein	-
CKW03_RS00685 (SAMEA4412673_00141)	-	149812..150390 (-)	579	WP_093100170.1	LemA family protein	-
CKW03_RS00690 (SAMEA4412673_00142)	-	150541..152088 (+)	1548	WP_093100172.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 462 a.a.
• Molecular weight: 51005.49 Da
• Isoelectric Point: 6.6481

>NTDB_id=1147815 CKW03_RS00665 WP_093100166.1 145838..147226(+) (radA) [Sphingobacterium mizutaii strain NCTC12149]
MAKTKSAYFCQSCGYESPKWLGQCPSCKQWNTFVEEVVEKASSRVPEWRSTSAGPSIQKRTNKAAVIHEIVYSEEQRILS
PDKEFNRVLGGGIVPGSLVLIGGEPGIGKSTLMLQLALSIPKVKTLYISGEESEQQIKMRAERLSQNSNANCYILTETSM
QNIFKQIDQVEPNVVVIDSIQTLHSAQIESAPGSVSQVRECTAELLRFAKETNTPVFIVGHITKDGSIAGPKVLEHMVDT
VLQFEGDRNHVYRILRAVKNRFGSSSELGIYEMQGSGLREVSNPSEIMLSQREEQVSGIAVAAMLEGMRPLMIEVQALVS
NSAYGTPQRSSTGFDTKRLNMLLAVLEKRFGFRLSAQDVFLNIAGGLRVEDPAIDLAVIAALISSQQDIALPSNITFAGE
VGLSGEIRAVNRIEQRIQEAEKLGFEQIFISKYNTKGLDVKRYQILVRPVATLEDVFRILFG

Nucleotide

• Length: 1389 bp

>NTDB_id=1147815 CKW03_RS00665 WP_093100166.1 145838..147226(+) (radA) [Sphingobacterium mizutaii strain NCTC12149]
ATGGCAAAAACAAAATCAGCATATTTCTGTCAATCATGTGGATATGAATCTCCAAAGTGGTTGGGGCAATGTCCTTCTTG
TAAACAATGGAATACCTTTGTTGAAGAAGTGGTGGAAAAGGCTTCTAGCCGCGTGCCTGAATGGCGTAGCACGAGCGCTG
GCCCAAGCATACAGAAAAGAACTAACAAAGCTGCGGTCATCCATGAGATCGTGTACTCCGAAGAGCAACGGATCTTATCT
CCGGATAAGGAGTTCAACCGCGTATTAGGGGGTGGGATTGTTCCGGGCTCCTTGGTTTTGATCGGTGGTGAACCAGGTAT
TGGAAAATCTACCCTGATGTTGCAACTGGCGTTATCTATTCCCAAGGTGAAAACCCTTTATATTTCGGGTGAGGAAAGTG
AACAGCAGATCAAGATGCGAGCGGAAAGATTGTCCCAGAACTCCAATGCGAATTGCTATATCCTTACGGAGACCTCCATG
CAGAACATCTTCAAGCAGATTGATCAAGTAGAACCCAATGTGGTGGTCATCGACTCCATACAGACCTTACATTCTGCTCA
GATAGAATCGGCTCCCGGTTCGGTCTCTCAAGTGCGGGAATGTACGGCTGAGTTGCTACGGTTTGCCAAAGAGACTAATA
CACCGGTCTTTATTGTAGGGCATATTACCAAAGATGGTTCCATTGCGGGACCAAAGGTATTGGAACATATGGTGGATACC
GTTTTGCAATTTGAAGGCGATAGAAACCACGTTTATCGCATACTTAGAGCGGTTAAAAATAGATTTGGATCTTCTTCTGA
ACTCGGTATCTATGAAATGCAGGGGTCCGGTTTAAGGGAAGTTTCCAACCCATCGGAAATCATGCTTTCGCAAAGGGAGG
AGCAGGTCAGTGGAATTGCCGTAGCAGCCATGTTAGAGGGCATGAGGCCATTGATGATCGAGGTGCAGGCCTTGGTGTCC
AACTCCGCATATGGAACGCCGCAGAGGAGCTCTACGGGTTTTGATACGAAAAGGTTGAACATGCTCTTGGCTGTCCTTGA
AAAACGCTTTGGATTTCGCTTAAGCGCGCAGGATGTATTCCTCAATATTGCTGGCGGACTAAGGGTGGAAGATCCCGCTA
TTGATTTGGCCGTTATTGCAGCGCTTATTTCATCTCAACAGGATATCGCTCTGCCTTCCAATATCACCTTTGCTGGTGAA
GTAGGTCTATCAGGCGAAATCAGGGCCGTAAATCGTATCGAACAGCGAATCCAAGAAGCTGAAAAATTAGGATTTGAACA
GATCTTTATTTCAAAATATAATACCAAAGGATTGGATGTGAAAAGATATCAGATCTTGGTCCGGCCAGTGGCTACCTTAG
AAGATGTCTTCAGGATATTATTTGGTTAA

Domains

Predicted by InterproScan.

• Subunit ChlI of Mg-chelatase (ChlI) (348-434)

• AAA domain (AAA_25) (76-226)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	53.448	100	0.537
radA	Streptococcus pneumoniae Rx1	49.784	100	0.498
radA	Streptococcus pneumoniae D39	49.784	100	0.498
radA	Streptococcus pneumoniae R6	49.784	100	0.498
radA	Streptococcus pneumoniae TIGR4	49.784	100	0.498
radA	Streptococcus mitis NCTC 12261	49.784	100	0.498
radA	Streptococcus mitis SK321	49.784	100	0.498