Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   CKV74_RS09875 Genome accession   NZ_LT906463
Coordinates   2088586..2089539 (-) Length   317 a.a.
NCBI ID   WP_007243282.1    Uniprot ID   -
Organism   Haemophilus pittmaniae strain NCTC13334     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2083586..2094539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV74_RS10670 - 2085264..2085476 (+) 213 Protein_1914 polyhydroxyalkanoate depolymerase -
  CKV74_RS09860 (NCTC13334_01985) - 2085939..2086853 (-) 915 WP_007243330.1 siderophore ABC transporter substrate-binding protein -
  CKV74_RS09865 (NCTC13334_01986) - 2086869..2087630 (-) 762 WP_007243235.1 ABC transporter ATP-binding protein -
  CKV74_RS09870 (NCTC13334_01987) - 2087634..2088593 (-) 960 WP_095177097.1 iron chelate uptake ABC transporter family permease subunit -
  CKV74_RS09875 (NCTC13334_01988) ceuB 2088586..2089539 (-) 954 WP_007243282.1 ABC transporter permease Machinery gene
  CKV74_RS09880 (NCTC13334_01989) mepM 2089716..2091218 (-) 1503 WP_095177156.1 murein DD-endopeptidase MepM -
  CKV74_RS09885 (NCTC13334_01990) znuC 2091402..2092193 (+) 792 WP_007243239.1 zinc ABC transporter ATP-binding protein ZnuC -
  CKV74_RS09890 (NCTC13334_01991) znuB 2092203..2092988 (+) 786 WP_007243310.1 zinc ABC transporter permease subunit ZnuB -
  CKV74_RS09895 (NCTC13334_01992) accA 2093090..2094037 (+) 948 WP_095177098.1 acetyl-CoA carboxylase carboxyl transferase subunit alpha -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34753.03 Da        Isoelectric Point: 10.2040

>NTDB_id=1147723 CKV74_RS09875 WP_007243282.1 2088586..2089539(-) (ceuB) [Haemophilus pittmaniae strain NCTC13334]
MIKRRYLLFLLLLLSIVSLFLGVSTVNLQGLLAFDGNQWQIFLISRLPRLVSILIAGASLSICGLVMQQLSRNRFVSPTT
AGTMDSARLGILLAILFFPGASMLLKTTVAVAVSFMGTLLFMSILSRLKFKDTIFVPLVGMMFGNIISAITAFLAYKEDL
LQNLSGWLQGDFSLVMAGRYELLYFSIPALLLAYLFANRFSIVGMGKDFAVNLGLNYNQVLYLGLLIVAVVSSIIIVSVG
VIPFLGLIIPNIVTLYLGDNLKKVLSHTALLGAVFVLMCDILGRSVIYPYEISINAVVGVFGSGIFLLLLFKRYRHA

Nucleotide


Download         Length: 954 bp        

>NTDB_id=1147723 CKV74_RS09875 WP_007243282.1 2088586..2089539(-) (ceuB) [Haemophilus pittmaniae strain NCTC13334]
ATGATTAAACGGCGTTATTTGCTTTTTTTATTACTTCTTTTATCCATTGTTTCCCTTTTCTTGGGCGTGAGTACGGTCAA
TTTGCAGGGCTTGTTAGCTTTTGACGGTAATCAATGGCAAATCTTCCTAATCAGTCGGCTGCCTCGTTTGGTGAGCATTT
TAATCGCAGGTGCTTCCTTAAGTATTTGTGGTTTGGTAATGCAGCAATTGAGCCGTAACCGTTTTGTTTCGCCGACCACC
GCCGGTACGATGGATAGTGCGCGACTTGGCATTTTGTTGGCCATTTTGTTTTTCCCCGGTGCCTCTATGCTATTAAAAAC
TACGGTTGCGGTCGCAGTTTCTTTTATGGGCACATTGCTTTTTATGAGCATTTTGTCGCGTTTAAAATTCAAGGATACGA
TTTTTGTGCCCCTAGTCGGCATGATGTTCGGCAATATCATTAGCGCTATTACGGCGTTTCTGGCGTATAAAGAAGATTTG
TTACAAAACCTGTCCGGCTGGCTACAAGGCGATTTTTCCTTGGTTATGGCGGGTCGTTATGAATTACTTTATTTCAGTAT
TCCGGCGTTATTGCTAGCTTATTTGTTTGCCAATCGTTTTTCCATTGTCGGTATGGGCAAGGATTTTGCCGTGAATTTAG
GACTTAATTACAACCAAGTGCTGTATTTGGGACTGTTGATTGTCGCGGTGGTGTCATCGATTATTATTGTATCGGTGGGT
GTGATTCCATTTTTGGGGCTGATTATTCCAAATATCGTGACGCTTTATTTAGGCGATAATCTGAAAAAAGTGTTGTCCCA
TACGGCCTTGCTTGGTGCTGTGTTTGTATTGATGTGCGATATTTTAGGACGCAGCGTGATTTATCCCTATGAAATTTCGA
TTAATGCCGTAGTCGGGGTGTTCGGTAGCGGTATTTTCCTTTTGTTATTGTTCAAACGGTACCGACATGCTTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.674

98.738

0.53

Multiple sequence alignment