Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   CKV85_RS09430 Genome accession   NZ_LT906454
Coordinates   1932348..1933067 (-) Length   239 a.a.
NCBI ID   WP_095123475.1    Uniprot ID   -
Organism   Streptococcus acidominimus strain NCTC11291     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1927348..1938067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV85_RS09400 (SAMEA4504048_02008) rimP 1928529..1929002 (-) 474 WP_095123732.1 ribosome maturation factor RimP -
  CKV85_RS09405 (SAMEA4504048_02009) - 1929121..1929561 (-) 441 WP_095123472.1 pyridoxamine 5'-phosphate oxidase family protein -
  CKV85_RS09415 (SAMEA4504048_02011) trmB 1929837..1930472 (-) 636 WP_095123473.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  CKV85_RS09420 (SAMEA4504048_02012) ccrZ 1930469..1931257 (-) 789 WP_017770293.1 cell cycle regulator CcrZ -
  CKV85_RS09425 (SAMEA4504048_02013) - 1931312..1932346 (-) 1035 WP_095123474.1 ABC transporter permease -
  CKV85_RS09430 (SAMEA4504048_02014) pptA 1932348..1933067 (-) 720 WP_095123475.1 ABC transporter ATP-binding protein Regulator
  CKV85_RS09435 (SAMEA4504048_02015) - 1933137..1933553 (+) 417 WP_017770290.1 HIT family protein -
  CKV85_RS09440 (SAMEA4504048_02016) - 1933553..1933870 (+) 318 WP_095123476.1 hypothetical protein -
  CKV85_RS09445 (SAMEA4504048_02017) - 1934055..1934486 (-) 432 WP_331711893.1 C39 family peptidase -
  CKV85_RS09450 (SAMEA4504048_02018) trmL 1934880..1935407 (-) 528 WP_095123478.1 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL -
  CKV85_RS09455 (SAMEA4504048_02020) trkA 1935670..1937034 (+) 1365 WP_095123479.1 Trk system potassium transporter TrkA -

Sequence

Protein


Download         Length: 239 a.a.        Molecular weight: 26748.97 Da        Isoelectric Point: 4.5677

>NTDB_id=1147505 CKV85_RS09430 WP_095123475.1 1932348..1933067(-) (pptA) [Streptococcus acidominimus strain NCTC11291]
MLKIDHLVGGYVNIPVLKDISFEVASGEVVGLIGLNGAGKSTTINEIIGLLQPYQGTITLDGQQLLEDPQTYRSKIGYIP
ETPILYEELTLREHLQTVALAYGLEDYNSLQDKLLKLFRLEDKLDWYPVNFSKGMKQKVMIIAALLIEPSLLIVDEPFLG
LDPLAIRDLTQLIQEEKEKGTAILMSTHVLDSADKMCDRFVILHHGQVLSSGSLVELRQHFNLPTASLSDIYMQLTQEN

Nucleotide


Download         Length: 720 bp        

>NTDB_id=1147505 CKV85_RS09430 WP_095123475.1 1932348..1933067(-) (pptA) [Streptococcus acidominimus strain NCTC11291]
ATGTTAAAAATTGATCACTTAGTGGGTGGTTATGTCAATATTCCTGTATTAAAAGACATCTCTTTTGAGGTGGCTTCAGG
GGAAGTGGTTGGCTTGATTGGATTAAATGGTGCAGGAAAGTCAACTACAATTAACGAAATTATAGGTCTTTTACAACCCT
ACCAAGGGACAATTACCTTGGATGGTCAGCAATTATTAGAAGACCCACAAACCTATCGCAGTAAAATCGGTTATATCCCT
GAGACGCCCATTCTCTATGAAGAGCTGACCTTGCGAGAGCATTTGCAGACAGTGGCTCTAGCCTATGGCTTAGAGGATTA
CAATAGCCTGCAAGACAAACTCTTGAAGCTCTTTCGTTTAGAGGATAAGTTAGACTGGTACCCAGTCAATTTTTCAAAAG
GGATGAAGCAAAAGGTCATGATCATTGCAGCTTTATTGATTGAACCGAGTTTGTTAATTGTCGACGAACCTTTTTTAGGT
CTAGATCCTTTAGCTATCCGCGATTTGACCCAGCTGATCCAGGAAGAAAAGGAAAAGGGTACAGCTATCCTTATGAGCAC
ACATGTTTTGGACTCAGCAGATAAGATGTGTGACCGTTTTGTGATCTTGCATCATGGTCAAGTTCTTTCTAGTGGTAGCT
TAGTTGAGTTGAGACAGCATTTTAATCTACCGACAGCTAGTTTATCGGATATTTACATGCAGTTGACGCAGGAGAACTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

71.967

100

0.72
  pptA Streptococcus thermophilus LMD-9

70.293

100

0.703

Multiple sequence alignment